Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010423.1 Corchorus capsularis cultivar CVL-1 contig10444, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93057

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
778--862
25
3.2
25
76
8
71
50
9
17
22
1.74
803--862
30
2.1
28
81
6
66
51
8
16
23
1.71
5795--5845
17
2.9
17
88
5
75
70
0
0
29
0.87
7654--7689
6
5.7
6
87
12
54
50
0
30
19
1.48
7657--7684
14
2.0
14
100
0
56
50
0
28
21
1.49
8275--8313
4
9.8
4
100
0
78
76
0
0
23
0.78
10052--10103
6
8.3
6
76
23
54
48
0
19
32
1.49
10052--10103
25
2.1
25
92
7
88
48
0
19
32
1.49
10063--10103
20
2.0
21
95
4
75
48
0
19
31
1.49
10054--10103
14
3.9
14
87
12
72
48
0
20
32
1.50
12963--13017
24
2.4
22
75
21
58
41
7
0
50
1.30
14910--14971
29
2.1
29
82
5
72
27
12
6
53
1.63
16535--16564
14
2.1
14
93
0
51
83
0
0
16
0.65
22844--23160
18
17.6
18
81
1
276
12
19
40
27
1.87
22844--23157
54
5.8
54
84
1
306
12
19
40
27
1.88
29011--29048
18
2.1
18
95
0
67
18
39
15
26
1.91
33860--33901
21
2.0
21
90
9
68
52
2
14
30
1.54
36032--36065
3
11.3
3
87
0
50
26
5
0
67
1.13
36354--36399
21
2.2
21
100
0
92
39
10
17
32
1.84
38414--38573
83
1.9
86
81
10
195
35
14
16
34
1.89
42591--42634
10
4.3
10
88
2
52
56
9
31
2
1.43
50513--50589
30
2.5
30
87
2
100
28
11
27
32
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57223--57265
12
3.5
12
80
3
50
76
0
4
18
0.95
57289--57367
30
2.6
31
91
4
133
26
34
10
29
1.89
57677--57755
30
2.6
31
89
4
133
26
34
10
29
1.89
57273--58011
388
1.9
388
98
0
1417
32
20
17
29
1.96
66359--66401
2
21.0
2
95
4
77
48
2
0
48
1.14
71402--71431
6
4.8
6
92
8
51
0
13
0
86
0.57
71401--71432
13
2.5
13
100
0
64
0
12
0
87
0.54
90978--91038
31
2.0
31
83
0
77
22
19
22
34
1.97
91299--91368
29
2.4
30
87
2
97
37
28
12
21
1.90

Tables:   1

The End!