Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010424.1 Corchorus capsularis cultivar CVL-1 contig10445, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47883

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6775--6873
40
2.5
40
76
12
103
22
10
24
43
1.83
7494--7533
20
2.0
20
85
0
53
52
0
2
45
1.14
7697--7763
31
2.4
28
82
12
84
34
4
19
41
1.72
9126--9157
2
16.0
2
100
0
64
50
0
0
50
1.00
14276--14305
2
15.0
2
100
0
60
50
0
0
50
1.00
16724--16766
3
14.3
3
100
0
86
67
0
0
32
0.91
17591--17626
19
1.9
20
88
11
58
30
0
0
69
0.89
20852--20894
19
2.2
20
84
15
56
18
2
9
69
1.26
22069--22117
25
2.0
25
84
8
64
44
0
10
44
1.37
23923--24736
199
3.9
199
77
12
778
33
13
18
33
1.90
25077--25107
16
1.9
16
93
0
53
58
0
6
35
1.24
25996--26030
17
2.0
18
88
5
54
28
0
2
68
1.04
26148--26193
23
2.0
23
91
0
74
39
13
17
30
1.87
26206--26246
21
2.0
21
90
0
64
24
43
4
26
1.74
26395--26502
26
4.2
26
80
10
132
53
10
0
35
1.41
26395--26466
11
5.4
15
69
25
63
55
12
0
31
1.37
26430--26509
18
4.7
18
68
18
55
56
8
1
33
1.38
27310--27353
21
2.0
22
83
12
56
59
11
18
11
1.61
27785--27884
50
2.0
50
83
11
125
50
18
9
23
1.75
32146--32188
21
2.0
21
100
0
86
27
18
23
30
1.98
33181--33640
168
2.8
164
82
6
575
28
13
18
40
1.88
36698--36732
17
2.1
17
89
5
54
54
5
20
20
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39927--39968
21
2.0
21
100
0
84
66
9
14
9
1.44
44662--44696
11
3.2
11
83
0
52
77
17
5
0
0.96
45900--45925
6
4.3
6
100
0
52
34
15
0
50
1.45

Tables:   1

The End!