genome.fa.s10427.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010427.1 Corchorus capsularis cultivar CVL-1 contig10448, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  178794

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
771--817	20	2.3	20	88	0	67	57	2	36	4	1.30
12060--12096	19	2.0	18	89	5	56	24	21	13	40	1.89
22322--22365	15	2.9	15	79	0	61	13	22	18	45	1.84
25339--25392	17	3.2	17	81	5	74	24	0	14	61	1.34
25339--25392	16	3.2	16	82	7	72	24	0	14	61	1.34
27187--27220	2	17.0	2	93	0	59	47	2	0	50	1.16
29111--29190	29	2.7	30	88	3	108	28	18	12	40	1.87
29302--29394	31	3.1	31	95	4	165	40	11	15	32	1.83
29943--29992	13	3.8	13	73	19	50	34	10	0	56	1.33
30186--30277	30	3.1	31	89	6	136	33	14	11	40	1.82
30388--30443	28	2.0	28	92	0	94	42	14	16	26	1.86
30399--30466	31	2.3	28	82	7	73	42	13	11	32	1.80
32171--32220	22	2.3	22	86	6	66	62	10	14	14	1.55
34003--34040	17	2.2	17	90	0	58	52	21	5	21	1.66
34148--34186	20	2.0	20	89	0	60	53	15	5	25	1.62
34214--34241	5	5.6	5	100	0	56	42	17	0	39	1.50
37584--37630	23	2.0	23	84	8	60	42	2	6	48	1.40
38794--38843	5	9.8	5	81	14	50	78	0	22	0	0.76
38801--38855	6	9.5	6	82	7	53	72	0	27	0	0.85
38794--38855	33	1.9	31	87	6	88	75	0	24	0	0.80
39026--39093	32	2.1	32	100	0	136	33	26	11	27	1.91
47215--47240	3	8.7	3	100	0	52	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48048--48104	29	2.0	29	89	3	89	24	19	14	42	1.88
49029--49107	27	2.8	27	76	7	68	41	13	17	26	1.87
49179--49206	2	14.0	2	100	0	56	50	0	0	50	1.00
49964--49995	2	16.0	2	100	0	64	50	0	0	50	1.00
50860--50908	25	2.0	25	100	0	98	34	16	16	32	1.91
55136--55265	64	2.0	64	100	0	260	21	13	15	50	1.78
55750--55782	14	2.4	14	90	10	50	42	0	3	54	1.15
56290--56333	12	3.4	12	77	17	52	59	0	0	40	0.98
56287--56339	27	2.0	27	100	0	106	58	0	0	41	0.98
57763--57801	21	2.0	21	90	10	64	17	0	17	64	1.30
58890--58918	12	2.3	13	94	5	51	44	24	10	20	1.82
61396--61422	2	13.5	2	100	0	54	51	0	0	48	1.00
61746--62750	442	2.3	440	84	3	1242	26	13	16	43	1.84
69494--69543	20	2.3	21	86	10	66	44	12	0	44	1.41
69634--69711	31	2.6	31	77	4	79	33	24	15	26	1.95
87258--87294	2	18.5	2	100	0	74	48	0	0	51	1.00
94167--94191	12	2.1	12	100	0	50	16	0	60	24	1.36
96227--96309	34	2.3	36	86	14	127	37	24	14	24	1.92
99102--99127	12	2.2	12	100	0	52	50	0	0	50	1.00
99267--99309	20	2.1	21	86	4	61	20	18	20	39	1.93
99297--99379	42	2.0	43	90	7	134	34	22	18	24	1.96
99754--99789	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103626--103862	78	3.2	77	87	9	325	36	13	0	50	1.45
110800--110870	21	3.4	21	94	0	124	52	25	12	9	1.70
111447--111491	23	2.0	23	82	8	56	6	17	8	66	1.40
114094--114148	24	2.2	25	80	3	67	47	5	0	47	1.25
115563--115618	29	1.9	29	88	0	85	46	7	19	26	1.76
118339--118382	19	2.3	19	88	0	61	11	52	2	34	1.50
124724--124761	21	1.9	19	85	15	51	73	15	7	2	1.17
125621--125712	46	2.0	46	100	0	184	26	10	26	36	1.89
130712--130761	21	2.4	21	80	3	66	16	34	8	42	1.77
130886--130917	14	2.3	14	94	0	55	62	3	0	34	1.11
130995--131031	9	4.0	9	86	6	56	24	2	0	72	0.97
131079--131139	15	4.4	15	73	21	53	31	1	11	55	1.45
131083--131138	26	2.2	26	83	6	69	32	1	10	55	1.45
131253--131296	21	2.1	21	91	0	70	31	9	40	18	1.81
140001--140030	10	2.9	10	95	5	51	0	10	0	90	0.47
140001--140031	15	2.1	14	94	5	53	0	9	0	90	0.46
143559--143663	31	3.4	31	97	0	192	27	17	17	38	1.92
143634--143683	23	2.2	22	89	3	73	28	22	18	32	1.97
143829--143884	3	18.7	3	100	0	112	66	0	0	33	0.92
144704--144771	35	1.9	35	82	5	84	52	7	8	30	1.60
145347--145609	134	2.0	132	90	5	419	28	9	9	52	1.63
149985--150011	5	5.4	5	100	0	54	0	18	0	81	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156205--156257	27	2.0	27	82	7	65	41	9	1	47	1.47
157770--157822	27	2.0	27	85	7	74	39	9	1	49	1.46
174260--174411	74	2.1	74	100	0	304	30	21	18	30	1.97
177818--177858	21	2.0	21	100	0	82	41	14	9	34	1.79

Tables:   1

The End!