Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010432.1 Corchorus capsularis cultivar CVL-1 contig10453, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51301

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1086--1246
82
1.9
85
87
3
238
21
16
22
39
1.92
12388--12442
2
26.5
2
82
14
67
49
0
5
45
1.25
12652--12694
12
3.5
12
90
6
68
34
13
23
27
1.93
14380--14438
20
3.0
20
77
22
72
37
13
22
27
1.91
17617--17661
6
7.3
6
85
5
54
0
53
0
46
1.00
18837--18861
3
8.3
3
100
0
50
68
32
0
0
0.90
21475--21503
13
2.1
14
93
6
51
48
6
0
44
1.29
21790--21881
45
2.0
47
85
6
125
40
7
17
34
1.78
22537--22633
33
2.9
33
76
11
101
13
41
31
13
1.83
22705--22816
32
3.5
32
84
8
147
12
25
42
19
1.86
22873--22914
21
2.1
19
83
16
50
47
9
30
11
1.72
32200--32277
30
2.6
30
91
2
120
34
25
11
28
1.91
34010--34073
30
2.1
31
82
11
78
25
9
10
54
1.65
40635--40700
31
2.1
31
88
5
98
27
21
6
45
1.75
41559--41596
19
2.0
20
85
15
53
28
7
0
63
1.23
41763--42298
22
23.8
21
65
17
100
38
9
15
36
1.80
41792--41909
44
2.6
44
83
12
152
37
10
15
37
1.81
42310--42361
22
2.4
22
87
3
70
40
9
9
40
1.71
42467--42541
20
3.7
20
81
3
87
41
10
14
33
1.81
42652--42753
23
4.5
23
84
4
102
42
7
10
39
1.69
42506--42777
22
12.6
22
76
9
161
41
8
12
37
1.75
42506--42890
22
17.7
22
70
14
133
38
9
14
37
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42819--42903
45
1.9
44
82
2
107
31
12
15
40
1.85
45407--45437
13
2.4
13
100
0
62
32
16
0
51
1.44
48640--48716
21
3.3
21
77
22
91
40
18
5
36
1.73
50940--50988
2
24.5
2
82
0
62
53
6
0
40
1.26

Tables:   1

The End!