Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01010433.1 Corchorus capsularis cultivar CVL-1 contig10454, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16443
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Found at i:1591 original size:167 final size:165
Alignment explanation
Indices: 1207--1642 Score: 579
Period size: 167 Copynumber: 2.6 Consensus size: 165
1197 CGAGTCATTT
* * * *
1207 GTCAATTGAGAAATGACCAAAAAGTTTAGTTATTTAATCCCCTCAAGAATCAAAAGTTTGGATAT
1 GTCATTTGAGAAATGACCAAAAAG-TTAGTTATTTAATCCACTCAAGAATCAAAAGTTAGGACAT
* * * * ** * *
1272 TTAAGTAATCTGCCAAGTAGGTAAAGACGAAAAAGATTAGTTCTCTAGCTCATCATCAATCCTTG
65 TTAAGTAATCTGCCAAGTAGGAAAAGACGAAAAAAATAAGTTCTCTAACTCAAAAGCAAGCCTTG
* * *
1337 ATGGGGATCTTTTATTAATTCCACTACTCTATTCAA
130 ATAGGGATCTTTTAGTAATTCCACTACTCTATTAAA
* * * *
1373 GTC-TATTAAGAAATGACCAAAAAGATTACTTGTTTAATCCTCTCAAAGAATCAAAAGTTAGGAC
1 GTCAT-TTGAGAAATGACCAAAAAG-TTAGTTATTTAATCCACTC-AAGAATCAAAAGTTAGGAC
* * *
1437 ATTTAAGTTATCTGCCAAGTAGAAAAAGACGAAAAAAATAAGTTCTGTAACTCCAAAAGCAAGCC
63 ATTTAAGTAATCTGCCAAGTAGGAAAAGACGAAAAAAATAAGTTCTCTAACT-CAAAAGCAAGCC
*
1502 TTGGTAGGGATCTTTTAGTAATTCCACTACTCTATTAAA
127 TTGATAGGGATCTTTTAGTAATTCCACTACTCTATTAAA
1541 GTCATTTGAGAAATGACCAAAAAGTCTAGTTATTTAATCCACTCAAGAATCAAAAGTTAGGACAT
1 GTCATTTGAGAAATGACCAAAAAGT-TAGTTATTTAATCCACTCAAGAATCAAAAGTTAGGACAT
*
1606 TTAAGTAATTTGCCAAGT-GTGAAAAGACGAAAAAAAT
65 TTAAGTAATCTGCCAAGTAG-GAAAAGACGAAAAAAAT
1643 TAATTATCTC
Statistics
Matches: 234, Mismatches: 30, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
166 38 0.16
167 116 0.50
168 79 0.34
169 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.30
Consensus pattern (165 bp):
GTCATTTGAGAAATGACCAAAAAGTTAGTTATTTAATCCACTCAAGAATCAAAAGTTAGGACATT
TAAGTAATCTGCCAAGTAGGAAAAGACGAAAAAAATAAGTTCTCTAACTCAAAAGCAAGCCTTGA
TAGGGATCTTTTAGTAATTCCACTACTCTATTAAA
Found at i:2270 original size:31 final size:31
Alignment explanation
Indices: 2229--2294 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
2219 AACTTTATGT
*
2229 TTTCCGATTGTACCCTTATTCTT-AAAACATA
1 TTTCCAATTGTACCCTT-TTCTTGAAAACATA
* *
2260 TTTCCAATTGTATCCTTTTTTTGAAAACATA
1 TTTCCAATTGTACCCTTTTCTTGAAAACATA
2291 TTTC
1 TTTC
2295 TAAATTGCTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
30 4 0.13
31 27 0.87
ACGTcount: A:0.27, C:0.20, G:0.06, T:0.47
Consensus pattern (31 bp):
TTTCCAATTGTACCCTTTTCTTGAAAACATA
Found at i:2880 original size:239 final size:240
Alignment explanation
Indices: 2387--2822 Score: 601
Period size: 239 Copynumber: 1.8 Consensus size: 240
2377 ATATAATACG
* * *
2387 TGTATTAAATTAGACAAATTATACAATACACCGTCAGTGGAGTTTAACAGACTACACTAAGTGGG
1 TGTATTTAATTTGACAAATTATACAATACACCGTCAGTGGAGTTTAACAGACTACACTAAGCGGG
* *
2452 TCCTAAAGGGTGACATGTGTCCCTTAGGGAATAGATTGAAAATTTTAAAACTTAATTAATTCAAA
66 TCCTAAAGGGTGACATGTGTCCCATAGGGAATAGATTCAAAATTTTAAAACTTAATTAATT--AA
* * *
2517 AAAAATGGACATGTGTCAACTCCACAACCCGCTTGTGGAGTCCAATATTTACACTGCCGGTATAT
129 AAAAATGGACATGTGTCAACTCCACAACCCGCTTGTGGAGTCCAAAATTTACACCGCCGGCATAT
* * * *
2582 CATATTTAAATTATAAGAAAGTCAATTTAGTTTTTTTGTTTTCAACGT
194 CATAATTAAATTATAAGAAAGTCAATTTA-TGTCTTTGTTTCCAACGT
** * ** *
2630 CCTATTTAATTTGACAAATTATACAATACACCGT-TGCTGGAGTTTAGTAGACTACGC-AAGCGG
1 TGTATTTAATTTGACAAATTATACAATACACCGTCAG-TGGAGTTTAACAGACTACACTAAGCGG
* *
2693 GTCCTGAAGGGTGACATGTGTCCCATAGGGACTAGATTC-AAATATTTAAAACTTAATTAATT-A
65 GTCCTAAAGGGTGACATGTGTCCCATAGGGAATAGATTCAAAAT-TTTAAAACTTAATTAATTAA
* *
2756 AAAAATGGACATGTGTCAACTCCATAACCCGCTTGTGGAGTCCAAAATTTACACCGCCGGCGTAT
129 AAAAATGGACATGTGTCAACTCCACAACCCGCTTGTGGAGTCCAAAATTTACACCGCCGGCATAT
2821 CA
194 CA
2823 AATAATTACC
Statistics
Matches: 173, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
239 63 0.36
241 4 0.02
242 59 0.34
243 47 0.27
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.31
Consensus pattern (240 bp):
TGTATTTAATTTGACAAATTATACAATACACCGTCAGTGGAGTTTAACAGACTACACTAAGCGGG
TCCTAAAGGGTGACATGTGTCCCATAGGGAATAGATTCAAAATTTTAAAACTTAATTAATTAAAA
AAATGGACATGTGTCAACTCCACAACCCGCTTGTGGAGTCCAAAATTTACACCGCCGGCATATCA
TAATTAAATTATAAGAAAGTCAATTTATGTCTTTGTTTCCAACGT
Found at i:3169 original size:27 final size:27
Alignment explanation
Indices: 3130--3191 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
3120 AATTTTTTTC
* *
3130 AAAT-ATATTTTAA-AATTGTCATTATT
1 AAATAATAATTTAATAATT-TCACTATT
*
3156 AAATAATAATTTAATTATTTCACTATT
1 AAATAATAATTTAATAATTTCACTATT
3183 AAAGTAATA
1 AAA-TAATA
3192 TAACTTTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 4 0.13
27 18 0.60
28 8 0.27
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (27 bp):
AAATAATAATTTAATAATTTCACTATT
Found at i:4124 original size:19 final size:20
Alignment explanation
Indices: 4097--4134 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
4087 AACTATTATT
4097 TTTTGAATTT-AATATTTTAC
1 TTTTGAATTTCAAT-TTTTAC
4117 TTTT-AATTTCAATTTTTA
1 TTTTGAATTTCAATTTTTA
4135 AATGTTAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (20 bp):
TTTTGAATTTCAATTTTTAC
Found at i:4373 original size:45 final size:43
Alignment explanation
Indices: 4293--4400 Score: 128
Period size: 45 Copynumber: 2.4 Consensus size: 43
4283 GTCTCTATGT
** *
4293 GGTTATCAAAATTTCATAAGATGGTTATTATAATTTCATGAG-GA
1 GGTTATCAAAATTTCAT-AGATGGTTACGAAAATTTCAT-AGTGA
*
4337 GGTTATCAAAATTCTCATAGTATGGTTACGAAAATTTCATAGTGT
1 GGTTATCAAAATT-TCATAG-ATGGTTACGAAAATTTCATAGTGA
*
4382 GGTTACCAAAATTTCATAG
1 GGTTATCAAAATTTCATAG
4401 GATCAAGTTA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
44 23 0.41
45 33 0.59
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (43 bp):
GGTTATCAAAATTTCATAGATGGTTACGAAAATTTCATAGTGA
Found at i:4400 original size:22 final size:22
Alignment explanation
Indices: 4290--4400 Score: 111
Period size: 22 Copynumber: 5.0 Consensus size: 22
4280 CTTGTCTCTA
4290 TGTGGTTATCAAAATTTCATAAG
1 TGTGGTTATCAAAATTTCAT-AG
* * *
4313 -ATGGTTATTATAATTTCATGAG
1 TGTGGTTATCAAAATTTCAT-AG
*
4335 -GAGGTTATCAAAATTCTCATAG
1 TGTGGTTATCAAAATT-TCATAG
*
4357 TATGGTTA-CGAAAATTTCATAG
1 TGTGGTTATC-AAAATTTCATAG
*
4379 TGTGGTTACCAAAATTTCATAG
1 TGTGGTTATCAAAATTTCATAG
4401 GATCAAGTTA
Statistics
Matches: 73, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
22 57 0.78
23 16 0.22
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (22 bp):
TGTGGTTATCAAAATTTCATAG
Found at i:4528 original size:22 final size:21
Alignment explanation
Indices: 4490--4629 Score: 97
Period size: 22 Copynumber: 6.4 Consensus size: 21
4480 ATCAAAGAGA
*
4490 TTATCAAAATGTT-ATAGCGAGG
1 TTAT-AAAAT-TTCATAGTGAGG
*
4512 TTATAAGAATTTCATAGTGTGG
1 TTATAA-AATTTCATAGTGAGG
*
4534 TTAACAAAATTTCATTAG-GAGG
1 TT-ATAAAATTTCA-TAGTGAGG
* * *
4556 TTACTAATATTTCATGGGGAGG
1 TTA-TAAAATTTCATAGTGAGG
* *
4578 TTATCAAAATTTTATAGTGTGG
1 TTAT-AAAATTTCATAGTGAGG
*
4600 TTATCAATATTTCATA-TGAAGG
1 TTAT-AAAATTTCATAGTG-AGG
4622 TTATAAAA
1 TTATAAAA
4630 GTCTAAACTT
Statistics
Matches: 94, Mismatches: 16, Indels: 17
0.74 0.13 0.13
Matches are distributed among these distances:
21 13 0.14
22 75 0.80
23 6 0.06
ACGTcount: A:0.36, C:0.07, G:0.19, T:0.38
Consensus pattern (21 bp):
TTATAAAATTTCATAGTGAGG
Found at i:4602 original size:44 final size:42
Alignment explanation
Indices: 4490--4629 Score: 129
Period size: 44 Copynumber: 3.2 Consensus size: 42
4480 ATCAAAGAGA
* * * *
4490 TTATCAAAATGTTATAGCGAGGTTATAAGAATTTCATAGTGTGG
1 TTATCAAAATTTTATAG-GAGGTTATAA-TATTTCATAGGGAGG
* * *
4534 TTAACAAAATTTCATTAGGAGGTTACTAATATTTCATGGGGAGG
1 TTATCAAAATTTTA-TAGGAGGTTA-TAATATTTCATAGGGAGG
* * *
4578 TTATCAAAATTTTATAGTGTGGTTATCAATATTTCATATGAAGG
1 TTATCAAAATTTTATAG-GAGGTTAT-AATATTTCATAGGGAGG
4622 TTAT-AAAA
1 TTATCAAAA
4630 GTCTAAACTT
Statistics
Matches: 79, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
43 8 0.10
44 65 0.82
45 6 0.08
ACGTcount: A:0.36, C:0.07, G:0.19, T:0.38
Consensus pattern (42 bp):
TTATCAAAATTTTATAGGAGGTTATAATATTTCATAGGGAGG
Found at i:4704 original size:22 final size:22
Alignment explanation
Indices: 4652--4820 Score: 120
Period size: 22 Copynumber: 7.7 Consensus size: 22
4642 GAAGGAGTAC
* * *
4652 CAAAATTTGATAGA-AGCTTAT
1 CAAAATTTCATAGAGTGATTAT
*
4673 C-AAATCTCATAGAGTGATTAT
1 CAAAATTTCATAGAGTGATTAT
*
4694 CGAAATTTCATAGAGATCGGATTAT
1 CAAAATTTCATAGAG-T--GATTAT
*
4719 CAAAATTT-ATATGA-AGATTAT
1 CAAAATTTCATA-GAGTGATTAT
* **
4740 CAAAATTTCATAGTGTTTTTAT
1 CAAAATTTCATAGAGTGATTAT
4762 CAAAATTTCA-A-AGTGAAGTTAT
1 CAAAATTTCATAGAGTG-A-TTAT
4784 CAAAATTAT-ATA-ATGTGATTAT
1 CAAAATT-TCATAGA-GTGATTAT
*
4806 CAGAATTTCATAGAG
1 CAAAATTTCATAGAG
4821 GGGTCAACAA
Statistics
Matches: 118, Mismatches: 15, Indels: 29
0.73 0.09 0.18
Matches are distributed among these distances:
20 12 0.10
21 24 0.20
22 55 0.47
23 6 0.05
24 6 0.05
25 15 0.13
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.36
Consensus pattern (22 bp):
CAAAATTTCATAGAGTGATTAT
Found at i:5163 original size:23 final size:23
Alignment explanation
Indices: 5134--5363 Score: 97
Period size: 22 Copynumber: 10.3 Consensus size: 23
5124 GAAAGTTATC
5134 ATTT-ATAGGGAGGTTTATCAAA
1 ATTTCATAGGGAGGTTTATCAAA
* * *
5156 ATTTTATAGGAAGATTTATCAAA
1 ATTTCATAGGGAGGTTTATCAAA
* *
5179 ATTTCATAGCGAGG-TTATCATA
1 ATTTCATAGGGAGGTTTATCAAA
* * *
5201 ATTTCATAGTG-TGATTATCAAA
1 ATTTCATAGGGAGGTTTATCAAA
* * * *
5223 ATTTCAGAGTG-TGATTA-CTAACA
1 ATTTCATAGGGAGGTTTATC-AA-A
* *
5246 A-TTCATATGGAGGTTT-TTAAA
1 ATTTCATAGGGAGGTTTATCAAA
* ** * *
5267 TTTTCATAACGTGG-TTATCAAT
1 ATTTCATAGGGAGGTTTATCAAA
* * *
5289 ATATCATATGGAGG-TTATCAAC
1 ATTTCATAGGGAGGTTTATCAAA
**
5311 ATCTT-ATAGTGTTGG-TTATCAAA
1 AT-TTCATAG-GGAGGTTTATCAAA
* * *
5334 ATTTCATTGAGAAG-TTATCAAA
1 ATTTCATAGGGAGGTTTATCAAA
5356 ATTTCATA
1 ATTTCATA
5364 TTGAGATCTT
Statistics
Matches: 157, Mismatches: 40, Indels: 22
0.72 0.18 0.10
Matches are distributed among these distances:
21 5 0.03
22 105 0.67
23 47 0.30
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.39
Consensus pattern (23 bp):
ATTTCATAGGGAGGTTTATCAAA
Found at i:5198 original size:45 final size:45
Alignment explanation
Indices: 5134--5228 Score: 115
Period size: 45 Copynumber: 2.1 Consensus size: 45
5124 GAAAGTTATC
* *
5134 ATTT-ATAGGGAGGTTTATCAAAATTTTATAG-GAAGATTTATCAAA
1 ATTTCATAGCGAGGTTTATCAAAATTTCATAGTG-AGA-TTATCAAA
* *
5179 ATTTCATAGCGAGG-TTATCATAATTTCATAGTGTGATTATCAAA
1 ATTTCATAGCGAGGTTTATCAAAATTTCATAGTGAGATTATCAAA
5223 ATTTCA
1 ATTTCA
5229 GAGTGTGATT
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
44 14 0.32
45 21 0.48
46 9 0.20
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (45 bp):
ATTTCATAGCGAGGTTTATCAAAATTTCATAGTGAGATTATCAAA
Found at i:5415 original size:21 final size:22
Alignment explanation
Indices: 5374--5416 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
5364 TTGAGATCTT
* *
5374 CAAAATTCCTTAGAGAGGTTAA
1 CAAAATTCATAAGAGAGGTTAA
5396 CAAAATTCATAAGA-AGGTTAA
1 CAAAATTCATAAGAGAGGTTAA
5417 AAAGAATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.47, C:0.12, G:0.16, T:0.26
Consensus pattern (22 bp):
CAAAATTCATAAGAGAGGTTAA
Found at i:5428 original size:21 final size:21
Alignment explanation
Indices: 5375--5428 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
5365 TGAGATCTTC
* * *
5375 AAAATTCCTTAGAGAGGTTAAC
1 AAAATTCATAAGA-AGGTTAAA
5397 AAAATTCATAAGAAGGTTAAA
1 AAAATTCATAAGAAGGTTAAA
5418 AAGAATT-ATAA
1 AA-AATTCATAA
5429 AAAGATTCTC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 13 0.46
22 15 0.54
ACGTcount: A:0.52, C:0.07, G:0.15, T:0.26
Consensus pattern (21 bp):
AAAATTCATAAGAAGGTTAAA
Found at i:14919 original size:31 final size:32
Alignment explanation
Indices: 14875--14941 Score: 75
Period size: 31 Copynumber: 2.1 Consensus size: 32
14865 AAAATATCAT
* *
14875 TTAAGGGTATCACCATTTT-GA-TTTGAGTCAA
1 TTAAGGATATCACC-TTTTCAATTTTGAGTCAA
* *
14906 TTAAGGATCTCACCTTTTCAATTTTGGGTCAA
1 TTAAGGATATCACCTTTTCAATTTTGAGTCAA
14938 TTAA
1 TTAA
14942 TGGTTATTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
30 4 0.13
31 13 0.43
32 13 0.43
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.40
Consensus pattern (32 bp):
TTAAGGATATCACCTTTTCAATTTTGAGTCAA
Found at i:16213 original size:31 final size:31
Alignment explanation
Indices: 16175--16309 Score: 161
Period size: 31 Copynumber: 4.4 Consensus size: 31
16165 TTAATTTGGC
*
16175 CAAATAAGGGCCTAACGTTATCGAAAATACT
1 CAAATAAGGGCCTAACGTTATCGAAAATGCT
* * **
16206 CAAATAAGGGCCTGATC-TT-T-TAATTTGGC-
1 CAAATAAGGGCCT-AACGTTATCGAAAAT-GCT
16235 CAAATAAGGGCCTAACGTTATCGAAAATGCT
1 CAAATAAGGGCCTAACGTTATCGAAAATGCT
**
16266 CAAATAAGGTTCTAACGTTATCGAAAATGCT
1 CAAATAAGGGCCTAACGTTATCGAAAATGCT
16297 CAAATAAGGGCCT
1 CAAATAAGGGCCT
16310 GGTGTCAGTT
Statistics
Matches: 85, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
28 2 0.02
29 18 0.21
30 5 0.06
31 58 0.68
32 2 0.02
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (31 bp):
CAAATAAGGGCCTAACGTTATCGAAAATGCT
Found at i:16273 original size:60 final size:60
Alignment explanation
Indices: 16115--16274 Score: 259
Period size: 60 Copynumber: 2.7 Consensus size: 60
16105 GCTAATTTCT
* *
16115 CAAATAAGGGCCTAACGTTTGTC-AAAATGCTCAAATAAAGACCCGATCTTTTAATTTGGC
1 CAAATAAGGGCCTAACG-TTATCGAAAATGCTCAAATAAGGACCCGATCTTTTAATTTGGC
* * *
16175 CAAATAAGGGCCTAACGTTATCGAAAATACTCAAATAAGGGCCTGATCTTTTAATTTGGC
1 CAAATAAGGGCCTAACGTTATCGAAAATGCTCAAATAAGGACCCGATCTTTTAATTTGGC
16235 CAAATAAGGGCCTAACGTTATCGAAAATGCTCAAATAAGG
1 CAAATAAGGGCCTAACGTTATCGAAAATGCTCAAATAAGG
16275 TTCTAACGTT
Statistics
Matches: 93, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
59 4 0.04
60 89 0.96
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (60 bp):
CAAATAAGGGCCTAACGTTATCGAAAATGCTCAAATAAGGACCCGATCTTTTAATTTGGC
Found at i:16372 original size:31 final size:31
Alignment explanation
Indices: 16337--16440 Score: 117
Period size: 31 Copynumber: 3.4 Consensus size: 31
16327 CGCGTGAGAC
16337 AGGCCCTTATTTGAGCATTTTGGCAAACGTT
1 AGGCCCTTATTTGAGCATTTTGGCAAACGTT
** *
16368 AGGCCCTTATTTG-GCCAAATT--CAAA-GATG
1 AGGCCCTTATTTGAG-CATTTTGGCAAACG-TT
* *
16397 GGGCTCTTATTTGAGCATTTTGGCAAACGTT
1 AGGCCCTTATTTGAGCATTTTGGCAAACGTT
16428 AGGCCCTTATTTG
1 AGGCCCTTATTTG
16441 GCC
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
28 1 0.02
29 20 0.35
30 2 0.04
31 33 0.58
32 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (31 bp):
AGGCCCTTATTTGAGCATTTTGGCAAACGTT
Done.