genome.fa.s10437.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010437.1 Corchorus capsularis cultivar CVL-1 contig10458, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48351

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2357--2394	18	2.1	19	90	5	60	47	18	10	23	1.79
5910--5961	26	2.0	26	96	0	95	23	1	11	63	1.37
9240--9274	13	2.6	13	86	4	52	82	11	5	0	0.82
12067--12108	20	2.1	21	86	8	61	28	7	7	57	1.52
17671--17800	45	2.9	46	78	12	119	37	16	12	33	1.86
17671--18105	22	20.0	22	70	14	167	35	16	10	37	1.82
17852--17953	23	4.5	23	85	1	109	39	14	8	37	1.78
17852--17975	45	2.8	45	80	12	123	37	15	8	37	1.79
17919--18036	60	2.0	61	81	5	141	34	13	7	44	1.72
18090--18156	19	3.5	19	95	2	116	23	23	10	41	1.85
18235--18409	22	8.0	22	71	11	128	32	16	9	41	1.81
18236--18361	66	1.9	66	83	6	166	34	14	9	41	1.78
18236--18381	66	2.2	66	81	7	163	34	13	9	41	1.77
18372--18409	20	1.9	20	94	0	67	23	21	13	42	1.88
18005--18496	248	2.0	240	88	3	725	33	18	8	39	1.82
18516--18859	22	15.6	22	69	11	186	33	16	9	40	1.80
18005--18632	248	2.6	246	83	6	643	33	17	8	40	1.81
18937--19017	22	4.0	20	71	20	53	40	17	9	32	1.82
18960--18994	18	1.9	18	88	0	52	45	17	8	28	1.77
19714--20488	262	3.0	262	98	0	1507	33	17	18	30	1.94
21147--21212	31	2.1	31	86	5	89	46	4	18	30	1.68
25762--25809	15	3.1	15	93	6	78	33	0	18	47	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41644--41812	31	5.5	31	81	2	196	34	23	21	20	1.96
44520--44563	14	2.9	16	87	9	58	34	0	0	65	0.93
46232--46476	124	2.0	121	81	8	284	37	15	13	33	1.87

Tables:   1

The End!