Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010439.1 Corchorus capsularis cultivar CVL-1 contig10460, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20382

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4218--4265
22
2.2
22
88
3
71
43
14
18
22
1.87
6673--6780
40
2.7
40
82
5
137
34
8
8
49
1.63
6765--7342
22
26.7
21
67
15
227
36
15
9
37
1.80
7124--7171
16
2.7
18
81
9
55
41
14
8
35
1.76
6765--7342
44
13.3
44
70
13
263
36
15
9
37
1.80
7449--7526
22
3.6
22
84
1
95
37
15
6
41
1.73
7423--7548
22
5.8
21
75
7
67
36
11
8
43
1.71
7422--7567
44
3.3
43
75
7
132
34
13
10
42
1.77
7644--7720
38
2.1
37
87
7
111
58
11
16
12
1.63
9538--9566
12
2.5
12
94
5
51
31
31
20
17
1.96
11916--11941
10
2.6
10
100
0
52
50
19
7
23
1.73
15710--15997
106
2.7
104
82
11
331
40
6
10
41
1.67
17212--17297
45
2.0
44
90
6
140
38
22
6
32
1.81
18226--18255
12
2.5
12
94
0
51
43
3
6
46
1.46
18931--19024
33
2.8
33
98
0
179
13
41
31
12
1.83
19323--19374
16
3.2
16
75
25
56
59
0
0
40
0.97
19317--19363
13
3.7
13
72
16
53
61
0
0
38
0.96
19317--19367
25
2.0
25
88
0
75
62
0
0
37
0.95

Tables:   1

The End!