Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010441.1 Corchorus capsularis cultivar CVL-1 contig10462, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40289

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
904--933
15
2.0
15
100
0
60
46
13
6
33
1.69
1075--1114
12
3.3
12
82
0
53
55
0
7
37
1.29
1075--1111
15
2.5
15
86
0
56
54
0
8
37
1.30
2264--2303
17
2.3
18
95
4
73
15
7
17
60
1.57
9058--9112
24
2.2
25
81
12
69
32
20
0
47
1.50
9120--9187
26
2.6
26
90
0
109
54
10
1
33
1.43
9120--9237
52
2.4
51
79
13
122
54
10
1
33
1.44
14998--15033
2
18.0
2
100
0
72
50
0
0
50
1.00
16116--16373
109
2.4
108
90
5
387
48
1
10
38
1.49
16946--16983
19
2.0
20
89
5
60
15
5
18
60
1.53
16946--16992
21
2.4
19
82
7
58
19
4
19
57
1.57
20751--20788
11
3.5
11
85
10
51
57
2
0
39
1.12
21043--21136
48
2.0
48
93
0
161
25
19
8
46
1.77
21848--21880
2
16.5
2
100
0
66
48
0
0
51
1.00
22647--22820
94
1.9
94
87
4
262
32
14
1
51
1.50
23094--23183
45
2.0
45
91
4
146
34
20
21
24
1.96
24773--25003
22
10.5
21
71
10
131
36
9
17
36
1.82
24803--24990
68
2.8
65
80
6
182
35
9
18
37
1.83
25037--25155
22
5.4
21
70
11
62
32
7
19
40
1.80
25013--25169
66
2.4
65
76
7
156
36
7
19
36
1.79
25209--25448
22
10.8
22
77
10
161
41
10
14
34
1.80
25594--26062
22
21.5
21
67
17
92
37
11
16
34
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25946--26059
44
2.6
43
75
8
106
37
12
14
35
1.84
27511--27544
16
2.1
16
100
0
68
38
0
5
55
1.24
27630--27654
12
2.1
12
100
0
50
28
0
0
72
0.86
28755--28780
13
2.0
13
100
0
52
38
15
23
23
1.92
29294--29449
78
2.0
78
84
2
206
30
19
26
23
1.98
40246--40289
2
22.0
2
100
0
88
50
0
50
0
1.00

Tables:   1

The End!