Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010442.1 Corchorus capsularis cultivar CVL-1 contig10463, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67498

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
124--184
30
2.0
31
87
9
90
45
4
18
31
1.70
2110--2242
64
2.1
64
91
0
212
42
12
16
27
1.85
5492--5543
27
1.9
27
85
14
72
40
5
3
50
1.45
8114--8138
2
12.5
2
100
0
50
52
0
0
48
1.00
8211--8344
60
2.3
59
86
3
180
39
17
16
26
1.90
8389--8552
60
2.7
59
83
7
222
28
17
17
37
1.92
9418--9457
21
1.9
21
89
0
62
0
12
7
80
0.91
14615--14648
16
2.1
16
100
0
68
47
17
23
11
1.81
17183--17258
31
2.5
31
82
6
91
30
21
15
32
1.94
24973--25041
21
3.0
23
77
18
63
33
10
1
55
1.43
25053--25494
148
3.0
149
91
4
737
35
8
4
52
1.50
25926--25963
20
2.0
20
84
5
51
13
7
28
50
1.69
26272--26310
2
19.5
2
94
0
69
48
0
2
48
1.15
26273--26319
10
4.8
10
92
2
60
48
0
6
44
1.28
31860--31928
33
2.1
33
91
0
111
28
14
11
44
1.80
33733--33848
58
2.0
58
96
0
214
24
26
9
39
1.86
36783--36886
53
2.0
53
94
3
183
49
10
6
33
1.64
37599--37650
23
2.5
20
74
20
52
44
7
5
42
1.57
38205--38248
3
14.7
3
95
0
79
63
0
2
34
1.07
40917--40941
11
2.3
11
100
0
50
16
24
32
28
1.96
47263--47384
57
2.1
57
92
0
199
37
18
13
30
1.89
49626--49667
17
2.5
17
81
11
52
40
9
11
38
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53825--53875
3
17.0
3
92
8
86
64
0
0
35
0.94
55916--55959
21
2.1
21
87
8
63
68
2
0
29
1.02
58433--58478
13
3.4
14
73
8
51
67
8
4
19
1.35
59455--59525
31
2.3
31
82
4
81
28
19
14
38
1.91
62863--63276
121
3.5
120
74
16
444
34
9
3
52
1.51
62991--63343
122
3.0
117
70
19
327
32
8
5
52
1.56

Tables:   1

The End!