genome.fa.s10445.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010445.1 Corchorus capsularis cultivar CVL-1 contig10466, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80463

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3864--4006	51	2.8	51	96	0	268	24	21	13	40	1.89
6201--6246	7	6.6	7	85	9	67	13	0	43	43	1.43
19947--20491	39	13.4	39	70	13	301	24	35	24	15	1.95
19979--20094	27	4.3	27	86	3	153	21	37	29	12	1.90
20036--20299	117	2.3	115	85	6	336	24	35	25	14	1.93
20094--20347	117	2.2	117	83	3	332	24	34	25	16	1.95
20263--20432	87	2.0	87	82	2	207	25	32	22	18	1.97
20224--20475	126	2.0	126	79	4	276	24	34	22	18	1.96
27866--28165	125	2.4	127	90	6	470	27	36	19	16	1.94
27866--28165	151	2.0	151	95	1	539	27	36	19	16	1.94
27866--28165	26	11.9	26	87	7	458	27	36	19	16	1.94
29968--30030	32	2.0	32	93	0	108	26	12	34	25	1.92
30022--30054	16	2.1	16	94	0	57	18	12	33	36	1.88
30219--30313	16	5.9	16	78	2	91	28	37	23	10	1.88
30388--30988	50	12.2	50	84	6	655	33	18	25	22	1.97
30388--30988	199	3.1	197	84	6	783	33	18	25	22	1.97
30965--31013	19	2.6	19	86	0	71	36	18	30	14	1.90
30989--31076	35	2.4	37	77	5	99	38	19	23	18	1.93
31124--31196	27	2.7	27	86	0	101	31	30	23	15	1.95
31177--31216	20	2.0	20	85	0	53	35	25	22	17	1.95
31214--31273	27	2.2	27	87	0	84	25	33	25	16	1.96
31115--31255	74	1.9	74	80	8	162	29	31	24	14	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33849--34182	26	13.2	26	91	4	558	26	36	19	17	1.94
33849--34182	76	4.4	77	94	3	563	26	36	19	17	1.94
33849--34182	102	3.3	101	93	4	575	26	36	19	17	1.94
45043--45184	70	2.0	70	87	0	203	32	16	19	30	1.95
49145--49196	26	2.0	26	84	0	68	30	13	5	50	1.65
65688--65718	15	2.1	15	93	0	53	29	22	3	45	1.68
66652--66765	59	1.9	59	94	0	201	24	21	23	30	1.99
66999--67435	236	1.9	236	96	0	802	36	8	18	35	1.83
69108--69144	13	2.8	13	95	0	65	83	0	0	16	0.64
69108--69145	7	5.6	7	90	6	60	84	0	0	15	0.63
79894--79921	14	2.0	14	100	0	56	35	0	28	35	1.58

Tables:   1

The End!