Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010447.1 Corchorus capsularis cultivar CVL-1 contig10468, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92504

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3143--3327
90
2.0
92
92
3
311
27
17
10
43
1.82
3174--3362
90
2.1
90
81
11
235
28
17
12
41
1.85
6843--6882
10
4.0
10
86
0
53
45
0
5
50
1.23
6786--7194
205
2.0
205
95
1
743
38
9
7
45
1.64
7046--7085
2
20.0
2
89
0
62
45
0
2
52
1.14
7097--7123
14
1.9
14
100
0
54
22
7
0
70
1.12
8539--8595
30
1.9
30
85
7
80
36
12
3
47
1.58
9005--9033
3
9.7
3
100
0
58
0
31
0
68
0.89
10060--10272
106
2.0
106
95
0
381
30
18
22
29
1.97
10565--10608
21
2.1
21
95
0
79
36
9
22
31
1.86
11010--11222
106
2.0
106
94
0
372
30
18
21
29
1.97
11515--11558
21
2.1
21
95
0
79
36
9
22
31
1.86
9728--11946
950
2.3
950
95
1
3949
34
16
21
27
1.94
14003--14028
13
2.0
13
100
0
52
38
15
30
15
1.88
19850--19897
17
2.8
17
80
0
60
22
20
20
35
1.96
23876--23964
43
2.1
43
100
0
178
46
8
4
40
1.56
30830--30868
12
3.6
12
80
19
50
25
28
15
30
1.96
30979--31004
10
2.6
10
100
0
52
38
23
7
30
1.83
31344--31376
3
11.3
3
93
6
59
30
0
36
33
1.58
32469--32505
12
3.1
12
88
0
56
29
24
10
35
1.89
48182--48235
15
3.5
15
76
18
65
46
24
0
29
1.53
48181--48243
32
2.0
32
100
0
126
44
23
0
31
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48441--48470
15
1.9
16
93
6
53
86
3
10
0
0.67
48444--48500
24
2.4
23
74
5
60
82
5
8
3
0.93
48431--48495
20
3.3
19
75
16
69
76
6
10
6
1.13
48506--48550
18
2.5
19
89
7
67
20
40
17
22
1.92
48577--48612
18
2.0
18
89
10
56
22
38
16
22
1.93
49096--49137
21
2.0
21
85
0
57
38
7
28
26
1.82
50410--50443
1
34.0
1
93
0
59
97
2
0
0
0.19
50410--50448
15
2.7
15
92
4
62
92
5
2
0
0.46
63710--63781
29
2.4
29
81
2
81
40
26
11
22
1.87
64547--64630
32
2.6
32
92
0
132
16
5
35
41
1.73
64777--64832
16
3.5
16
77
0
58
7
12
30
50
1.67
71435--71479
21
2.1
21
83
0
54
17
31
11
40
1.85
71731--71817
33
2.6
33
87
0
111
13
37
34
13
1.85
71958--72031
32
2.3
32
95
0
130
14
27
43
14
1.85
73381--73406
7
3.7
7
100
0
52
26
30
11
30
1.92

Tables:   1

The End!