Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010450.1 Corchorus capsularis cultivar CVL-1 contig10471, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24354

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
613--1044
223
1.9
222
92
2
731
28
15
13
42
1.85
8327--8397
23
3.1
23
71
15
74
22
40
21
15
1.90
8485--8597
53
2.2
52
85
6
149
30
40
13
15
1.86
8485--8601
26
4.5
25
76
7
117
29
39
14
16
1.88
9464--9493
9
3.3
9
90
0
51
36
23
16
23
1.94
11692--11838
30
4.8
30
87
2
177
3
43
31
21
1.69
11685--11838
60
2.5
60
86
3
200
3
44
30
22
1.68
11785--11881
30
3.1
30
89
4
140
6
37
34
22
1.79
11869--11962
30
3.1
30
90
0
143
4
35
35
25
1.76
12363--12394
2
16.5
2
93
6
57
53
0
0
46
1.00
15462--15526
30
2.1
31
85
2
87
46
4
18
30
1.69
19335--19373
20
2.0
20
90
5
62
53
0
7
38
1.30
21554--21612
31
1.9
31
92
0
100
47
8
16
27
1.76
22591--22680
2
41.0
2
83
16
108
45
2
6
45
1.42
22591--22631
5
8.8
5
92
7
61
43
0
12
43
1.41
22591--22678
23
4.0
21
87
12
106
45
2
6
45
1.42
22591--22683
25
3.8
24
91
7
143
45
3
6
45
1.45
22801--23323
22
23.6
22
70
10
207
35
14
10
39
1.80
23429--23598
22
7.8
22
73
8
96
34
15
10
40
1.82
23404--23597
44
4.4
44
76
3
142
34
14
10
40
1.80
23448--23629
66
2.8
64
77
8
174
32
15
10
41
1.81
23404--23570
88
1.9
88
82
4
212
33
14
10
41
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23651--23708
22
2.6
22
81
10
73
36
17
10
36
1.84
23744--23883
22
6.3
22
78
9
122
38
20
9
32
1.84
24049--24086
19
2.0
20
85
15
53
63
2
5
28
1.30

Tables:   1

The End!