Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010456.1 Corchorus capsularis cultivar CVL-1 contig10477, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54483

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1566--1594
4
7.2
4
100
0
58
24
24
0
51
1.48
12955--13089
45
3.0
45
98
0
261
39
11
16
33
1.84
15509--15581
33
2.2
33
87
4
103
10
28
39
20
1.86
15883--16420
22
24.7
21
68
13
177
35
14
10
38
1.81
15942--15989
21
2.3
20
79
10
51
29
12
6
52
1.63
16677--16904
22
10.4
22
72
11
130
34
14
9
41
1.79
16652--16822
44
3.9
44
77
3
139
34
14
9
41
1.78
16696--16824
66
2.0
66
82
3
161
34
14
10
41
1.80
16652--16818
88
1.9
88
82
4
212
33
14
10
41
1.79
17000--17060
24
2.7
23
78
9
63
36
16
9
37
1.82
17488--17607
22
5.4
21
76
10
96
38
19
10
32
1.85
21349--21386
17
2.2
18
90
4
60
60
0
26
13
1.33
21566--21609
11
4.0
11
88
8
54
43
0
2
54
1.12
23351--23391
21
2.0
21
90
0
64
39
12
2
46
1.54
29432--29462
2
15.5
2
100
0
62
48
0
0
51
1.00
40804--40842
15
2.7
15
92
4
62
53
15
23
7
1.67
44801--44918
63
1.9
62
91
1
191
33
30
6
29
1.83
46046--46170
63
2.0
61
92
3
205
32
25
8
33
1.87
46107--47397
369
3.6
368
85
5
1702
36
17
11
34
1.86
47178--47768
260
2.3
252
89
5
893
34
19
12
33
1.89
47716--47842
64
2.0
63
87
7
186
31
28
8
31
1.87
48569--48687
63
1.9
63
82
6
152
31
26
7
35
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48994--49055
29
2.1
29
87
0
88
48
4
12
33
1.63
50164--50194
2
15.5
2
100
0
62
51
0
0
48
1.00
53577--53664
36
2.4
36
98
0
167
43
0
6
50
1.29
54079--54121
12
3.5
12
93
6
77
34
16
23
25
1.95

Tables:   1

The End!