genome.fa.s10457.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010457.1 Corchorus capsularis cultivar CVL-1 contig10478, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22653

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1130--1168	12	3.6	12	74	25	50	30	15	28	25	1.96
3356--3381	3	8.7	3	100	0	52	0	34	0	65	0.93
4459--4496	2	19.0	2	100	0	76	50	0	0	50	1.00
4943--4970	14	2.0	14	100	0	56	50	0	7	42	1.30
4956--5045	41	2.2	41	97	0	171	30	11	17	41	1.84
5362--5396	16	2.2	16	94	0	61	14	25	14	45	1.82
6832--6938	32	3.3	32	90	2	178	14	38	37	9	1.79
8451--9845	199	7.1	196	83	6	1660	34	18	13	33	1.90
12296--12337	2	21.5	2	90	4	68	47	0	0	52	1.00
13481--13511	10	3.1	10	100	0	62	51	0	0	48	1.00
14470--14548	40	2.0	40	92	0	131	35	2	11	50	1.52
14527--14558	15	2.1	15	94	0	55	34	0	12	53	1.39
18239--18433	27	7.2	26	76	9	167	21	21	3	54	1.58
18239--18405	55	3.1	53	76	12	162	20	20	2	55	1.56
18469--18549	22	3.7	21	71	14	56	22	17	4	55	1.61
18490--18536	23	2.0	23	83	0	58	19	10	4	65	1.39
18527--18653	69	1.9	67	81	6	157	22	22	5	48	1.71
18634--18883	22	11.5	22	72	10	167	23	22	4	49	1.68
18649--18770	64	1.9	64	81	6	149	24	21	4	50	1.66
18700--18881	87	2.1	86	83	7	226	23	23	5	47	1.72
18694--18890	109	1.8	106	81	5	243	24	22	5	47	1.71
18871--18933	15	4.5	14	73	15	58	23	11	4	60	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18915--19159	20	13.3	19	70	21	148	19	23	6	49	1.72
18971--19049	33	2.4	33	100	0	158	18	21	8	50	1.74
19033--19176	40	3.7	39	75	14	138	18	24	6	50	1.72
22188--22252	31	2.1	31	97	0	121	38	20	6	35	1.77
22290--22342	23	2.3	23	93	0	88	52	11	3	32	1.55
22344--22408	32	2.0	32	90	0	103	38	18	13	29	1.89
22391--22428	20	1.9	20	88	0	58	36	23	13	26	1.91

Tables:   1

The End!