Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001046.1 Corchorus capsularis cultivar CVL-1 contig01046, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 701

Length: 1169
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37


Found at i:360 original size:25 final size:26

Alignment explanation


    Indices: 332--387  Score: 78
    Period size: 25  Copynumber: 2.2  Consensus size: 26

        322 TAAACAGATC

                       *              
        332 TCGTGTCTCGTGTACCTGTTT-AATT
          1 TCGTGTCTCGTATACCTGTTTCAATT

                         * *          
        357 TCGTGTCTCGTATTCGTGTTTCAATT
          1 TCGTGTCTCGTATACCTGTTTCAATT

                 
        383 TCGTG
          1 TCGTG

        388 ACCCGATTAA


Statistics
Matches: 27,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  25   18  0.67
  26    9  0.33

ACGTcount: A:0.11, C:0.20, G:0.21, T:0.48


Consensus pattern (26 bp):   
TCGTGTCTCGTATACCTGTTTCAATT
Done.