Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010461.1 Corchorus capsularis cultivar CVL-1 contig10482, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67414

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2569--2609
20
2.0
21
90
4
66
24
19
19
36
1.95
2599--2679
42
1.9
43
82
7
103
32
25
17
24
1.97
3431--3476
14
3.4
14
81
3
58
32
13
26
28
1.93
8292--8356
30
2.2
30
94
0
112
26
41
4
27
1.75
9536--9571
9
4.0
9
85
0
54
58
0
38
2
1.13
13404--14007
22
28.0
22
69
13
233
35
15
9
39
1.80
13649--13772
45
2.8
46
81
8
132
37
13
8
40
1.76
13906--13944
20
2.0
20
100
0
78
25
23
10
41
1.86
14041--14094
21
2.5
22
85
8
76
33
12
7
46
1.70
14019--14183
87
1.9
86
80
9
192
32
15
9
43
1.78
14129--14214
22
3.8
22
77
10
68
29
13
12
44
1.81
14267--14390
22
5.6
22
71
14
87
37
17
8
37
1.80
14428--14588
22
7.2
21
76
10
124
37
19
9
32
1.84
14753--14790
19
2.0
20
85
15
53
63
2
5
28
1.30
24835--24870
17
2.1
17
100
0
72
36
19
11
33
1.87
46156--46220
30
2.1
31
91
2
105
27
21
4
46
1.71
47176--47273
39
2.6
38
78
3
124
14
18
10
57
1.65
48017--48120
53
2.0
52
86
5
147
18
18
26
36
1.94
48202--48259
17
3.4
17
76
9
55
27
18
20
32
1.97
48463--48501
14
3.0
13
82
10
53
48
0
0
51
1.00
48870--48920
19
2.6
20
84
6
68
41
9
17
31
1.82
48932--48988
22
2.6
22
86
5
71
42
10
10
36
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49043--49145
23
4.5
23
81
6
111
36
8
14
39
1.77
49021--49145
46
2.8
45
83
7
139
38
8
14
38
1.77
48994--49147
22
7.1
21
72
16
102
38
9
14
37
1.80
52374--52419
23
2.0
24
86
4
67
39
34
6
19
1.78
57364--57638
135
2.0
135
100
0
550
29
18
19
32
1.96
66676--66703
4
7.0
4
100
0
56
0
0
25
75
0.81

Tables:   1

The End!