Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010462.1 Corchorus capsularis cultivar CVL-1 contig10483, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35259

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3554--3578
11
2.3
11
100
0
50
52
16
0
32
1.44
4225--4268
20
2.2
20
91
0
70
45
22
6
25
1.77
4398--4797
202
2.0
205
91
3
662
33
15
16
35
1.90
6327--6358
14
2.3
14
100
0
64
34
34
6
25
1.81
8379--8447
31
2.2
31
97
0
129
47
5
17
28
1.70
8503--8554
15
3.5
15
77
17
54
42
9
0
48
1.36
8536--8604
21
3.4
19
77
16
59
52
2
1
43
1.25
8539--8598
21
2.7
23
77
20
72
53
3
1
41
1.27
9686--10069
132
2.9
132
89
2
592
34
13
19
33
1.90
17207--17763
22
25.5
22
67
13
201
36
15
10
38
1.81
17347--17454
45
2.4
44
80
7
112
40
17
10
31
1.83
17475--17597
45
2.8
46
82
8
139
37
14
8
39
1.78
18493--18739
22
11.3
22
72
10
159
32
15
10
41
1.81
18468--18617
44
3.4
43
77
8
124
32
14
10
43
1.79
18964--19073
22
5.0
22
79
6
98
37
15
11
35
1.84
18951--19070
44
2.7
44
77
10
118
36
15
11
35
1.84
19203--19228
6
4.3
6
100
0
52
15
0
34
50
1.45
19422--19497
38
2.1
35
87
7
107
56
13
17
13
1.67
20868--20924
27
2.1
27
86
0
78
56
7
7
29
1.53
22491--22547
12
4.6
12
82
8
78
26
7
1
64
1.28
23089--23121
17
1.9
17
93
0
57
0
9
45
45
1.35
23945--24020
16
4.8
16
74
8
75
13
10
38
38
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23945--24020
31
2.4
32
93
2
127
13
10
38
38
1.79
23960--24013
15
3.5
15
77
5
63
18
9
33
38
1.83
24168--24254
16
5.4
16
80
0
93
6
11
29
51
1.64
24168--24254
32
2.7
32
92
0
147
6
11
29
51
1.64
27556--27627
21
3.4
21
71
17
76
27
5
11
55
1.57
27548--27636
43
2.1
43
100
0
178
28
7
8
55
1.59

Tables:   1

The End!