Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010464.1 Corchorus capsularis cultivar CVL-1 contig10485, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25658

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
877--2333
769
1.9
769
85
7
2001
38
11
11
37
1.79
1967--2009
3
14.3
3
95
0
77
67
2
0
30
1.03
2494--3149
332
1.9
333
82
5
820
39
8
12
39
1.74
4105--4146
21
2.0
20
86
4
57
33
7
0
59
1.25
5773--5823
2
24.5
2
92
7
84
49
0
3
47
1.20
9631--9705
16
4.8
16
77
9
73
40
36
14
9
1.78
9631--9702
31
2.3
31
83
7
83
40
36
13
9
1.78
11405--11441
17
2.2
17
95
0
65
43
21
29
5
1.75
11411--11485
19
4.0
19
74
6
64
38
16
20
25
1.92
11693--11792
31
3.3
30
81
8
130
23
27
18
32
1.97
14161--14301
29
4.8
29
89
3
203
34
14
24
26
1.94
18308--18347
21
1.9
21
94
0
71
22
20
20
37
1.94
18374--18403
2
15.0
2
100
0
60
50
0
0
50
1.00
25001--25078
40
2.0
40
89
2
122
25
11
8
53
1.66

Tables:   1

The End!