Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010465.1 Corchorus capsularis cultivar CVL-1 contig10486, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69107

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
255--282
2
14.0
2
100
0
56
50
0
0
50
1.00
587--627
16
2.5
17
84
7
50
7
19
41
31
1.79
2238--2306
34
2.1
33
86
5
95
23
13
8
55
1.65
6933--6971
2
20.5
2
84
10
55
46
0
0
53
1.00
21432--21504
16
4.7
15
77
11
58
52
28
12
6
1.64
21652--21759
32
3.4
31
87
7
155
38
35
10
15
1.82
25644--25685
12
3.5
12
84
9
59
11
7
0
80
0.88
25700--25960
106
2.5
104
89
3
382
40
8
9
42
1.66
28806--28884
31
2.5
31
88
8
124
32
12
18
35
1.89
33225--33259
17
1.9
19
88
11
56
25
5
0
68
1.11
35779--35817
20
2.0
20
100
0
78
35
10
10
43
1.73
36792--36873
41
2.0
41
90
0
128
28
15
20
35
1.94
38395--38460
30
2.2
30
91
0
105
33
16
12
37
1.86
39644--39709
32
2.1
32
97
0
123
27
27
21
24
1.99
47415--47449
17
2.1
17
89
5
54
54
5
14
25
1.62
49025--49064
3
13.3
3
100
0
80
65
0
0
35
0.93
59240--59388
49
3.0
49
99
0
289
39
3
6
51
1.43
59274--59356
19
4.8
18
69
29
65
40
4
3
50
1.41
65722--65751
3
10.0
3
100
0
60
33
0
0
66
0.92
67749--67805
28
2.0
28
93
0
96
21
17
17
43
1.88
68498--68554
28
2.1
27
90
9
89
38
19
19
22
1.93

Tables:   1

The End!