Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010468.1 Corchorus capsularis cultivar CVL-1 contig10489, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47099

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6880--6954
22
3.4
22
78
7
71
40
8
16
36
1.77
6948--7043
44
2.2
44
83
3
113
33
14
13
38
1.85
7085--7136
22
2.3
23
80
3
61
36
1
11
50
1.50
7973--8044
35
2.1
35
100
0
144
44
25
11
19
1.83
9987--10078
31
3.0
31
86
0
121
35
26
11
26
1.91
10452--10481
14
2.1
15
93
6
53
26
3
0
70
1.03
16061--16113
27
2.0
27
100
0
106
15
15
11
58
1.63
16101--16154
27
2.0
27
85
7
74
14
7
20
57
1.61
16365--16419
2
29.5
2
76
20
57
43
0
1
54
1.10
16374--16422
5
9.6
5
80
12
55
42
0
2
55
1.11
16364--16424
14
4.2
14
76
19
63
42
0
1
55
1.09
16365--16422
16
3.6
16
80
13
66
43
0
1
55
1.10
19851--19889
14
2.8
14
88
0
60
5
20
33
41
1.74
20680--20714
17
2.1
17
100
0
70
22
11
5
60
1.52
26433--26564
61
2.1
62
87
1
194
46
18
12
23
1.82
39204--39233
2
15.0
2
100
0
60
50
0
0
50
1.00
44139--44171
16
2.1
16
100
0
66
42
18
27
12
1.85
44540--44716
68
2.6
68
93
1
304
39
22
9
28
1.85
46451--46592
64
2.2
66
93
3
252
49
16
19
14
1.80

Tables:   1

The End!