Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010469.1 Corchorus capsularis cultivar CVL-1 contig10490, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139682

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
982--1018
18
2.1
18
94
0
65
40
5
16
37
1.71
2244--2272
7
4.1
7
100
0
58
86
0
13
0
0.58
9431--9489
30
2.0
30
86
0
82
18
18
37
25
1.94
10626--10673
23
2.0
24
84
4
62
31
6
0
62
1.20
17274--17353
24
3.7
24
68
25
86
46
21
6
26
1.75
19728--19757
2
15.0
2
100
0
60
50
0
0
50
1.00
22116--22165
24
2.1
24
100
0
100
30
8
4
58
1.45
22212--22245
2
17.0
2
93
0
59
47
0
2
50
1.16
25497--25578
16
5.2
16
66
8
51
18
6
32
42
1.75
25475--25578
32
3.3
32
85
5
140
19
6
32
41
1.77
25497--25572
15
4.9
15
73
7
62
19
5
31
43
1.73
25726--25780
16
3.4
16
75
9
58
7
12
30
49
1.68
25726--25846
32
3.8
31
82
5
145
6
14
30
47
1.70
25741--25847
16
6.8
16
75
10
87
5
15
30
47
1.69
31350--31381
16
2.0
16
100
0
64
37
31
6
25
1.81
40703--40743
12
3.4
12
83
12
57
2
34
36
26
1.70
47072--47108
16
2.3
16
85
0
56
67
8
13
10
1.41
51708--52060
156
2.3
155
79
4
372
34
18
15
31
1.92
61322--61348
9
3.0
9
100
0
54
11
0
0
88
0.50
62130--62178
21
2.3
21
85
0
62
28
28
32
10
1.90
68580--68639
4
14.2
4
96
3
93
28
25
23
23
2.00
69373--69426
21
2.6
21
100
0
108
33
50
0
16
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72843--72891
21
2.3
21
86
6
64
30
28
30
10
1.90
74701--74740
12
3.3
12
82
0
53
12
32
25
30
1.92
84103--84135
17
1.9
17
100
0
66
27
6
36
30
1.81
84491--84851
156
2.3
156
79
6
392
35
19
14
30
1.92
86446--86508
24
2.7
23
74
11
67
39
12
6
41
1.69
103351--103385
13
2.7
13
90
0
52
22
11
8
57
1.61
107126--107159
17
2.0
17
94
0
59
26
11
38
23
1.89
117169--117297
64
2.0
64
89
3
197
25
19
20
34
1.96
122180--122209
14
2.1
14
93
0
51
26
43
0
30
1.55
129620--129659
7
5.7
7
96
0
62
50
15
0
35
1.44
131971--132011
2
20.5
2
94
0
73
48
2
0
48
1.14
137279--137314
17
2.1
17
100
0
72
0
33
11
55
1.35

Tables:   1

The End!