Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010471.1 Corchorus capsularis cultivar CVL-1 contig10492, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 830

Length: 1384
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32


Found at i:1040 original size:6 final size:6

Alignment explanation


    Indices: 1029--1059  Score: 62
    Period size: 6  Copynumber: 5.2  Consensus size: 6

       1019 AGCAAAGCAG

                                                
       1029 ATCTAA ATCTAA ATCTAA ATCTAA ATCTAA A
          1 ATCTAA ATCTAA ATCTAA ATCTAA ATCTAA A

       1060 GCAAATTAAT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32


Consensus pattern (6 bp):   
ATCTAA

Found at i:1074 original size:13 final size:13

Alignment explanation


    Indices: 1056--1090  Score: 61
    Period size: 13  Copynumber: 2.7  Consensus size: 13

       1046 AATCTAAATC

                         
       1056 TAAAGCAAATTAA
          1 TAAAGCAAATTAA

                    *    
       1069 TAAAGCAATTTAA
          1 TAAAGCAAATTAA

                     
       1082 TAAAGCAAA
          1 TAAAGCAAA

       1091 CAATAATTAT


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  13   20  1.00

ACGTcount: A:0.60, C:0.09, G:0.09, T:0.23


Consensus pattern (13 bp):   
TAAAGCAAATTAA
Done.