Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010478.1 Corchorus capsularis cultivar CVL-1 contig10499, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37496

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1341--1376
19
1.9
18
88
5
54
41
2
22
33
1.68
4958--5486
170
3.1
170
90
1
819
29
18
15
35
1.93
8416--8463
16
3.0
16
87
0
69
56
33
8
2
1.41
9736--9787
27
1.9
27
84
7
70
19
5
25
50
1.69
9801--9856
26
2.1
27
86
3
78
14
14
25
46
1.82
9863--9916
27
2.0
27
85
7
74
20
16
24
38
1.92
13447--13510
23
2.7
23
75
15
69
48
3
10
37
1.54
14754--14842
42
2.1
42
87
0
124
14
26
29
29
1.95
19048--19990
469
2.0
469
100
0
1886
23
22
18
35
1.95
21740--21828
42
2.1
42
89
0
133
13
29
30
26
1.94
22029--22095
25
2.7
25
90
2
109
7
23
28
40
1.82
22135--22226
35
2.6
35
84
3
114
28
22
16
32
1.96
30419--30446
6
4.7
6
100
0
56
85
0
0
14
0.59
32542--32640
24
4.0
25
73
12
80
12
24
21
42
1.86
32550--32651
48
2.1
48
81
1
114
12
22
19
45
1.84
32667--32718
27
1.9
27
84
0
68
7
25
48
19
1.75
32712--32825
16
6.9
17
80
4
81
12
22
35
29
1.91
32729--32835
49
2.2
49
84
3
144
11
21
36
30
1.88
32723--32791
33
2.1
33
83
5
86
14
21
31
31
1.93
33002--33075
32
2.3
32
92
0
121
27
40
10
21
1.86
33138--33213
32
2.4
32
90
0
125
27
43
10
18
1.83
32905--33321
138
3.1
137
86
5
550
23
32
12
31
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33166--33427
104
2.5
107
87
3
386
24
31
14
30
1.94
33379--33426
16
2.9
18
70
17
50
27
41
12
18
1.86
33449--33500
16
3.2
16
75
0
50
26
26
13
32
1.94
33379--33491
32
3.5
32
82
0
136
28
36
11
23
1.90

Tables:   1

The End!