Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001048.1 Corchorus capsularis cultivar CVL-1 contig01048, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4196
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.37


Found at i:8 original size:2 final size:2

Alignment explanation


    Indices: 2--39  Score: 69
    Period size: 2  Copynumber: 19.5  Consensus size: 2

          1 A

                                                                      
          2 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

         40 AAGAACAATA


Statistics
Matches: 35,  Mismatches: 0, Indels: 2
        0.95            0.00        0.05

Matches are distributed among these distances:
   1    1  0.03
   2   34  0.97

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.