Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010483.1 Corchorus capsularis cultivar CVL-1 contig10504, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12633

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1203--1345
52
2.8
52
97
0
268
31
15
13
39
1.87
5621--5657
14
2.7
14
87
4
58
37
8
8
45
1.63
5971--6003
6
5.7
6
85
7
50
66
15
3
15
1.37
7284--7314
16
1.9
16
93
0
53
25
29
3
41
1.71
7334--7580
8
32.0
8
69
13
124
27
23
1
47
1.59
7377--7497
53
2.3
53
88
0
179
28
23
0
47
1.52
7480--7551
37
1.9
37
88
0
108
25
19
1
54
1.52
7586--7682
50
1.9
50
85
4
133
19
21
14
44
1.86
7670--7789
64
1.9
64
85
3
170
28
20
6
45
1.76
7670--7789
22
5.5
22
77
7
120
28
20
6
45
1.76
7705--7786
42
1.9
43
87
9
123
24
18
6
51
1.69
7778--7820
22
1.9
23
85
4
61
37
20
4
37
1.74
7753--7832
8
10.5
8
68
12
53
35
17
3
43
1.67
7946--8071
8
16.9
8
69
22
55
26
24
3
45
1.71
7937--8063
14
8.7
14
67
23
50
26
23
3
45
1.70
7960--8062
22
4.5
22
77
12
91
26
24
4
44
1.73
8991--9091
42
2.4
42
81
3
105
6
24
42
25
1.79

Tables:   1

The End!