Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010491.1 Corchorus capsularis cultivar CVL-1 contig10512, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9122
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33


Found at i:2034 original size:20 final size:21

Alignment explanation


    Indices: 1995--2035  Score: 57
    Period size: 20  Copynumber: 2.0  Consensus size: 21

       1985 AGTCGACTAA

                          **     
       1995 GAGCAAAGTCGACTTTACAAG
          1 GAGCAAAGTCGACTACACAAG

                                 
       2016 GAGCAAA-TCGACTACACAAG
          1 GAGCAAAGTCGACTACACAAG

       2036 TCGACTTTTG


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  20   11  0.61
  21    7  0.39

ACGTcount: A:0.41, C:0.22, G:0.22, T:0.15


Consensus pattern (21 bp):   
GAGCAAAGTCGACTACACAAG

Found at i:4640 original size:19 final size:18

Alignment explanation


    Indices: 4616--4651  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       4606 TGAAGATTTC

                               
       4616 TTGAAGATAATTTGAAGAT
          1 TTGAAGATAA-TTGAAGAT

                    *        
       4635 TTGAAGATCATTGAAGA
          1 TTGAAGATAATTGAAGA

       4652 ATTATTTCAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    7  0.44
  19    9  0.56

ACGTcount: A:0.42, C:0.03, G:0.22, T:0.33


Consensus pattern (18 bp):   
TTGAAGATAATTGAAGAT
Done.