Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010492.1 Corchorus capsularis cultivar CVL-1 contig10513, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8042
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.32


Found at i:869 original size:25 final size:26

Alignment explanation


    Indices: 841--898  Score: 93
    Period size: 26  Copynumber: 2.3  Consensus size: 26

        831 AAAGGAAAAC

                                      
        841 TTTTTTT-TCGACGCAAAA-CAATTT
          1 TTTTTTTATCGACGCAAAACCAATTT

                 *                    
        865 TTTTTATATCGACGCAAAACCAATTT
          1 TTTTTTTATCGACGCAAAACCAATTT

                    
        891 TTTTTTTA
          1 TTTTTTTA

        899 GAAAAAAACG


Statistics
Matches: 30,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  24    6  0.20
  25   11  0.37
  26   13  0.43

ACGTcount: A:0.29, C:0.16, G:0.07, T:0.48


Consensus pattern (26 bp):   
TTTTTTTATCGACGCAAAACCAATTT
Done.