Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010493.1 Corchorus capsularis cultivar CVL-1 contig10514, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19258

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
998--1046
21
2.3
22
83
13
59
40
12
14
32
1.83
2819--3319
265
1.9
266
95
0
914
29
20
18
31
1.96
3713--3809
33
2.9
33
84
0
131
22
37
29
10
1.87
4787--4820
8
4.1
8
85
7
50
58
14
2
23
1.50
10250--10356
33
3.2
33
84
2
135
23
38
28
9
1.86
15853--15906
9
5.9
9
81
12
65
77
0
20
1
0.86
15850--15907
20
3.0
20
87
12
77
77
0
20
1
0.86
15850--15917
27
2.5
27
88
4
93
76
0
22
1
0.87
16361--16418
20
2.8
22
82
7
68
74
0
24
1
0.92
16748--16791
17
2.6
17
82
7
54
77
0
18
4
0.94
16735--16794
14
4.4
14
72
8
52
73
0
21
5
1.02
17052--17151
50
2.0
50
84
3
130
34
15
14
37
1.87
17346--17404
29
2.0
29
93
0
100
38
16
10
33
1.83
17649--17944
139
2.1
139
87
2
416
26
29
18
26
1.98
17649--17944
70
4.3
70
80
6
359
26
29
18
26
1.98
18054--18290
47
5.0
47
89
0
357
20
24
20
35
1.96

Tables:   1

The End!