Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010495.1 Corchorus capsularis cultivar CVL-1 contig10516, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2939
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32


Found at i:1244 original size:124 final size:121

Alignment explanation


    Indices: 1027--1270  Score: 461
    Period size: 124  Copynumber: 2.0  Consensus size: 121

       1017 TCTACCATTA

                                                                             
       1027 GGCTCGATACAAGTCCACGCCACAAAGGGATCTCATGATACATATATAGCCCTTGTTACCAGTTG
          1 GGCTCGATACAAGTCCACGCCACAAAGGGATCTCATGATACATATATAGCCCTTGTTACCAGTTG

                                                                    
       1092 TTTCCATCTCAAACTAATTAAATATTGGATGCTTATGTCAATTTAGATCACTGGAG
         66 TTTCCATCTCAAACTAATTAAATATTGGATGCTTATGTCAATTTAGATCACTGGAG

                                                                             
       1148 GGCTCGATACAAGTCCACCACGCCACAAAGGGATCTCATGATACATATATAGCCCTTGTTACCAG
          1 GGCTCGATACAAGT---CCACGCCACAAAGGGATCTCATGATACATATATAGCCCTTGTTACCAG

                                                                      
       1213 TTGTTTCCATCTCAAACTAATTAAATATTGGATGCTTATGTCAATTTAGATCACTGGA
         63 TTGTTTCCATCTCAAACTAATTAAATATTGGATGCTTATGTCAATTTAGATCACTGGA

       1271 ATTTCTTGGA


Statistics
Matches: 120,  Mismatches: 0, Indels: 3
        0.98            0.00        0.02

Matches are distributed among these distances:
 121   14  0.12
 124  106  0.88

ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30


Consensus pattern (121 bp):   
GGCTCGATACAAGTCCACGCCACAAAGGGATCTCATGATACATATATAGCCCTTGTTACCAGTTG
TTTCCATCTCAAACTAATTAAATATTGGATGCTTATGTCAATTTAGATCACTGGAG
Done.