Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010499.1 Corchorus capsularis cultivar CVL-1 contig10520, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119153

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--3192
332
9.6
331
83
6
3369
35
17
13
33
1.89
14021--14053
13
2.6
13
90
4
50
84
9
6
0
0.76
27524--27552
14
2.0
15
93
6
51
34
3
0
62
1.12
34395--34563
31
5.5
31
88
2
214
17
23
27
31
1.97
83275--83308
2
18.0
2
88
11
54
47
0
0
52
1.00
100457--100489
1
33.0
1
100
0
66
0
0
0
100
0.00
101629--101653
2
12.5
2
100
0
50
48
0
0
52
1.00
107122--107154
6
5.5
6
96
0
57
48
15
36
0
1.45
107454--107625
86
2.0
86
98
0
335
29
20
28
20
1.98
107620--107678
29
2.0
29
100
0
118
49
10
6
33
1.63
116406--116633
20
11.2
20
68
3
143
35
5
26
32
1.80
116406--116657
40
6.2
40
94
2
432
35
5
26
32
1.79
116406--116657
81
3.1
81
95
1
443
35
5
26
32
1.79
118213--119150
323
2.9
322
85
4
1150
37
16
13
32
1.88

Tables:   1

The End!