Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010501.1 Corchorus capsularis cultivar CVL-1 contig10522, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129553

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1032
323
3.2
321
87
3
1391
37
16
13
32
1.87
1187--1977
321
2.5
321
84
4
1021
36
16
13
33
1.88
1844--2107
130
2.0
132
85
4
356
33
15
11
39
1.84
2831--4420
26
59.1
26
82
10
1716
33
23
15
27
1.94
2927--3071
73
1.9
76
84
8
199
33
24
13
28
1.93
34687--35925
620
2.0
620
97
0
2345
44
13
10
31
1.78
68208--68238
15
2.1
15
93
0
53
25
32
22
19
1.97
68278--68358
28
2.9
28
92
3
128
27
37
17
18
1.93
72540--72573
6
5.7
6
85
0
50
0
5
32
61
1.20
75664--75692
14
2.1
14
100
0
58
27
24
6
41
1.80
75936--75972
5
7.6
5
82
17
51
62
0
0
37
0.96
77934--77994
32
1.9
32
86
6
88
55
9
6
27
1.57
80744--80777
14
2.5
14
90
4
52
64
17
14
2
1.40
103925--104008
42
2.0
42
100
0
168
30
23
19
26
1.98
104889--104928
18
2.2
18
90
0
62
45
12
7
35
1.70
110140--110165
2
13.0
2
100
0
52
50
0
0
50
1.00
120249--120282
14
2.4
14
90
9
52
64
26
8
0
1.22

Tables:   1

The End!