Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01010502.1 Corchorus capsularis cultivar CVL-1 contig10523, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 71295
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Found at i:317 original size:31 final size:31
Alignment explanation
Indices: 282--413 Score: 146
Period size: 31 Copynumber: 4.3 Consensus size: 31
272 TTAATTTGGC
*
282 CAAATAAGGGCCTAACATTATCGAAAATGCT
1 CAAATAAGGGCCTAACGTTATCGAAAATGCT
* * **
313 CAAATAAGGGCCCAATC-TT-T-TAATTTGGC-
1 CAAATAAGGGCCTAA-CGTTATCGAAAAT-GCT
*
342 CAAATAAGGGCCTAATGTTATCGAAAATGCT
1 CAAATAAGGGCCTAACGTTATCGAAAATGCT
* *
373 CAAATAAGGGCGTAACGTTATCTAAAATGCT
1 CAAATAAGGGCCTAACGTTATCGAAAATGCT
404 CAAATAAGGG
1 CAAATAAGGG
414 TCTGGTGTCA
Statistics
Matches: 83, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
29 19 0.23
30 6 0.07
31 57 0.69
32 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (31 bp):
CAAATAAGGGCCTAACGTTATCGAAAATGCT
Found at i:353 original size:29 final size:29
Alignment explanation
Indices: 253--353 Score: 89
Period size: 29 Copynumber: 3.4 Consensus size: 29
243 CTAAAATGCT
* * *
253 CAAATAAAGGTCCGATCTTTTAATTTGGC
1 CAAATAAGGGCCCAATCTTTTAATTTGGC
* * **
282 CAAATAAGGGCCTAA-CATTATCGAAAAT-GC
1 CAAATAAGGGCCCAATC-TT-T-TAATTTGGC
312 TCAAATAAGGGCCCAATCTTTTAATTTGGC
1 -CAAATAAGGGCCCAATCTTTTAATTTGGC
342 CAAATAAGGGCC
1 CAAATAAGGGCC
354 TAATGTTATC
Statistics
Matches: 55, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
28 1 0.02
29 28 0.51
30 6 0.11
31 19 0.35
32 1 0.02
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.27
Consensus pattern (29 bp):
CAAATAAGGGCCCAATCTTTTAATTTGGC
Found at i:380 original size:60 final size:60
Alignment explanation
Indices: 222--383 Score: 236
Period size: 60 Copynumber: 2.7 Consensus size: 60
212 GCTAATTGCT
* * * * * *
222 CAAATACGAGCCTAATGTT-TGCTAAAATGCTCAAATAAAGGTCCGATCTTTTAATTTGGC
1 CAAATAAGGGCCTAATGTTAT-CGAAAATGCTCAAATAAGGGCCCAATCTTTTAATTTGGC
**
282 CAAATAAGGGCCTAACATTATCGAAAATGCTCAAATAAGGGCCCAATCTTTTAATTTGGC
1 CAAATAAGGGCCTAATGTTATCGAAAATGCTCAAATAAGGGCCCAATCTTTTAATTTGGC
342 CAAATAAGGGCCTAATGTTATCGAAAATGCTCAAATAAGGGC
1 CAAATAAGGGCCTAATGTTATCGAAAATGCTCAAATAAGGGC
384 GTAACGTTAT
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
60 90 0.99
61 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (60 bp):
CAAATAAGGGCCTAATGTTATCGAAAATGCTCAAATAAGGGCCCAATCTTTTAATTTGGC
Found at i:520 original size:62 final size:60
Alignment explanation
Indices: 441--619 Score: 200
Period size: 62 Copynumber: 3.0 Consensus size: 60
431 ATGACGCGTG
* *
441 AGAC-AGGCCCTTATTTGAGCATTTTGGCATACGTTAGGCCCTTATTTGGCCAAATTCAA
1 AGACGAGGCCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGGCCAAATTAAA
* * * * *
500 AGACGGGGCCCTTTTATTTGAGCATTTTTGCAAACGTTAGGCCCCTATTTGACTAAATTAAA
1 AGACGAGGCCC--TTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGGCCAAATTAAA
** * * * * *
562 AGATTATGCCCTTATTTGTGCATTTTGTCAAACGTTAAGCCCTTATTTGGGC-AATTAA
1 AGACGAGGCCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGGCCAAATTAA
620 CCGATATTTA
Statistics
Matches: 98, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
59 10 0.10
60 38 0.39
62 50 0.51
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (60 bp):
AGACGAGGCCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGGCCAAATTAAA
Found at i:18572 original size:19 final size:19
Alignment explanation
Indices: 18544--18580 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
18534 GAAGGATATG
* *
18544 AAAATTTTAATTCTACACC
1 AAAATCTTAATACTACACC
18563 AAAATCTTAATACTACAC
1 AAAATCTTAATACTACAC
18581 AAATTCTCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (19 bp):
AAAATCTTAATACTACACC
Found at i:22760 original size:1 final size:1
Alignment explanation
Indices: 22754--22783 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
22744 TCCTCAAGAT
22754 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
22784 CAAATTCTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:23844 original size:21 final size:22
Alignment explanation
Indices: 23818--23860 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
23808 ATATAGTGAA
23818 TTACTAAATACCGCCC-CCTTT
1 TTACTAAATACCGCCCTCCTTT
**
23839 TTACTAGGTACCGCCCTCCTTT
1 TTACTAAATACCGCCCTCCTTT
23861 GGACAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.19, C:0.37, G:0.09, T:0.35
Consensus pattern (22 bp):
TTACTAAATACCGCCCTCCTTT
Found at i:25939 original size:16 final size:16
Alignment explanation
Indices: 25918--25952 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
25908 AGTGTGGAAA
25918 AGACAAGAGAATAGAG
1 AGACAAGAGAATAGAG
* *
25934 AGACAATAGAATATAG
1 AGACAAGAGAATAGAG
25950 AGA
1 AGA
25953 AGAATAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.57, C:0.06, G:0.26, T:0.11
Consensus pattern (16 bp):
AGACAAGAGAATAGAG
Found at i:34625 original size:141 final size:141
Alignment explanation
Indices: 34371--34659 Score: 553
Period size: 141 Copynumber: 2.1 Consensus size: 141
34361 CATTCTTTTT
34371 CTATTTAGCACAGCATTTTGCATGAATGTTATAGTGATGACTTTCCCTGTTGTGTTATTTGATCA
1 CTATTTAGCACAGCATTTTGCATGAATGTTATAGTGATGACTTTCCCTGTTGTGTTATTTGATCA
34436 CTTCTCATGCTAAAGCCATAATCATGGAAGATGTCTGCCATCTTTTACTTGTTCTTATTTCAGTT
66 CTTCTCATGCTAAAGCCATAATCATGGAAGATGTCTGCCATCTTTTACTTGTTCTTATTTCAGTT
34501 ATCCCTAGTGG
131 ATCCCTAGTGG
34512 CTATTTAGCACAGCATTTTGCATGAATGTTATAGTGATGACTTTCCCTGTTGTGTTATTTGATCA
1 CTATTTAGCACAGCATTTTGCATGAATGTTATAGTGATGACTTTCCCTGTTGTGTTATTTGATCA
*
34577 CTTCTCATGCTAAAGCCATAATCATGGAAGATGTCTGCCGTCTTTTACTTGTTCTTATTTCAGTT
66 CTTCTCATGCTAAAGCCATAATCATGGAAGATGTCTGCCATCTTTTACTTGTTCTTATTTCAGTT
*
34642 ATCCTTAGTGG
131 ATCCCTAGTGG
34653 CT-TTTAG
1 CTATTTAG
34660 AGTGTTAACT
Statistics
Matches: 146, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
140 5 0.03
141 141 0.97
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.42
Consensus pattern (141 bp):
CTATTTAGCACAGCATTTTGCATGAATGTTATAGTGATGACTTTCCCTGTTGTGTTATTTGATCA
CTTCTCATGCTAAAGCCATAATCATGGAAGATGTCTGCCATCTTTTACTTGTTCTTATTTCAGTT
ATCCCTAGTGG
Found at i:36510 original size:22 final size:22
Alignment explanation
Indices: 36482--36528 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
36472 CCTCTTTCAC
36482 TAAAATATTTATATTTTTTGAT
1 TAAAATATTTATATTTTTTGAT
36504 TAAAATATTTATATTTTTTGAT
1 TAAAATATTTATATTTTTTGAT
36526 TAA
1 TAA
36529 TTTCAATGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.57
Consensus pattern (22 bp):
TAAAATATTTATATTTTTTGAT
Found at i:43376 original size:12 final size:12
Alignment explanation
Indices: 43359--43383 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
43349 TCAGAGGTAA
43359 TTCTTTTTTTTT
1 TTCTTTTTTTTT
43371 TTCTTTTTTTTT
1 TTCTTTTTTTTT
43383 T
1 T
43384 CCCATCTATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TTCTTTTTTTTT
Found at i:44932 original size:6 final size:6
Alignment explanation
Indices: 44921--44945 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
44911 CCCATGACTG
44921 TGAAGT TGAAGT TGAAGT TGAAGT T
1 TGAAGT TGAAGT TGAAGT TGAAGT T
44946 AAGGGATCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (6 bp):
TGAAGT
Found at i:47226 original size:2 final size:2
Alignment explanation
Indices: 47219--47244 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
47209 ATATTCAACT
47219 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
47245 GTAAGTCTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:52577 original size:33 final size:34
Alignment explanation
Indices: 52505--52591 Score: 90
Period size: 33 Copynumber: 2.6 Consensus size: 34
52495 ACCGTGGCGA
* *
52505 AGCCGCCCCACTGGGGAGGC-TCAACCACGGTGG
1 AGCCGCCCCACTGGGGCGGCTTCAACCACGGTGC
* *
52538 AACCGCCCCACTGGGGCGGCTTC-ACCATGG-GC
1 AGCCGCCCCACTGGGGCGGCTTCAACCACGGTGC
**
52570 AGGCCGCCCCGGTGGGGCGGCT
1 A-GCCGCCCCACTGGGGCGGCT
52592 CGGCTATTTT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
32 2 0.04
33 41 0.91
34 2 0.04
ACGTcount: A:0.14, C:0.38, G:0.38, T:0.10
Consensus pattern (34 bp):
AGCCGCCCCACTGGGGCGGCTTCAACCACGGTGC
Found at i:65275 original size:4 final size:4
Alignment explanation
Indices: 65266--65325 Score: 66
Period size: 4 Copynumber: 15.0 Consensus size: 4
65256 ATGGTAGGGA
* * * *
65266 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT GTAT GTAT GTAT ATGT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
* *
65314 ATGT ATGT ATAT
1 ATAT ATAT ATAT
65326 GTATGTATGA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 52 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (4 bp):
ATAT
Found at i:65281 original size:10 final size:10
Alignment explanation
Indices: 65266--65325 Score: 66
Period size: 10 Copynumber: 6.0 Consensus size: 10
65256 ATGGTAGGGA
65266 ATATATATAT
1 ATATATATAT
65276 ATATATATAT
1 ATATATATAT
65286 ATATATATAT
1 ATATATATAT
* *
65296 ATGTATGTAT
1 ATATATATAT
* *
65306 GTATATGTAT
1 ATATATATAT
* *
65316 GTATGTATAT
1 ATATATATAT
65326 GTATGTATGA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 44 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (10 bp):
ATATATATAT
Found at i:65285 original size:14 final size:14
Alignment explanation
Indices: 65266--65325 Score: 66
Period size: 14 Copynumber: 4.3 Consensus size: 14
65256 ATGGTAGGGA
65266 ATATATATATATAT
1 ATATATATATATAT
65280 ATATATATATATAT
1 ATATATATATATAT
* * *
65294 ATATGTATGTATGT
1 ATATATATATATAT
* * *
65308 ATATGTATGTATGT
1 ATATATATATATAT
65322 ATAT
1 ATAT
65326 GTATGTATGA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 43 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (14 bp):
ATATATATATATAT
Found at i:65326 original size:14 final size:14
Alignment explanation
Indices: 65279--65334 Score: 85
Period size: 14 Copynumber: 4.0 Consensus size: 14
65269 TATATATATA
* * *
65279 TATATATATATATA
1 TATATGTATGTATG
65293 TATATGTATGTATG
1 TATATGTATGTATG
65307 TATATGTATGTATG
1 TATATGTATGTATG
65321 TATATGTATGTATG
1 TATATGTATGTATG
65335 AAAGTGAGGA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 39 1.00
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (14 bp):
TATATGTATGTATG
Found at i:65330 original size:4 final size:4
Alignment explanation
Indices: 65295--65334 Score: 52
Period size: 4 Copynumber: 11.0 Consensus size: 4
65285 TATATATATA
65295 TATG TATG TATG TA-- TATG TATG TATG TA-- TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
65335 AAAGTGAGGA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
2 4 0.12
4 28 0.88
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:66006 original size:22 final size:21
Alignment explanation
Indices: 65978--66151 Score: 159
Period size: 22 Copynumber: 7.9 Consensus size: 21
65968 TGATGGATAC
65978 CATATGAAATTTTGGTAACCT
1 CATATGAAATTTTGGTAACCT
* * *
65999 ACATATGAAATTTTTGTTAATCA
1 -CATATGAAA-TTTTGGTAACCT
* * *
66022 CATTATGAAATTTTGTTCATCT
1 CA-TATGAAATTTTGGTAACCT
* *
66044 CCTTATGAAATTTTCGTAACCT
1 -CATATGAAATTTTGGTAACCT
66066 CCATATGAAATTTTGGTAACCT
1 -CATATGAAATTTTGGTAACCT
* *
66088 CGCTATGAAATTTTGGTAACTT
1 C-ATATGAAATTTTGGTAACCT
* **
66110 CGCTATGAAATTTCAGTAACCT
1 C-ATATGAAATTTTGGTAACCT
66132 CACTATGAAATTTTGGTAAC
1 CA-TATGAAATTTTGGTAAC
66152 TGCCTTATGT
Statistics
Matches: 127, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
21 1 0.01
22 109 0.86
23 17 0.13
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.40
Consensus pattern (21 bp):
CATATGAAATTTTGGTAACCT
Found at i:66095 original size:44 final size:42
Alignment explanation
Indices: 65977--66174 Score: 184
Period size: 44 Copynumber: 4.5 Consensus size: 42
65967 GTGATGGATA
* *
65977 CCATATGAAATTTTGGTAACCTACATATGAAATTTTTGTTAA-T
1 CCATATGAAATTTTGGTAACCT-CCTATGAAA-TTTTGGTAACT
* * * *
66020 CACATTATGAAATTTTGTTCATCTCCTTATGAAATTTTCGTAACCT
1 C-CA-TATGAAATTTTGGTAACCTCC-TATGAAATTTTGGTAA-CT
66066 CCATATGAAATTTTGGTAACCTCGCTATGAAATTTTGGTAACTT
1 CCATATGAAATTTTGGTAACCTC-CTATGAAATTTTGGTAAC-T
**
66110 CGC-TATGAAATTTCAGTAACCTCACTATGAAATTTTGGTAACT
1 C-CATATGAAATTTTGGTAACCTC-CTATGAAATTTTGGTAACT
* * *
66153 GCCTTATGTAATTTTTGTAACC
1 -CCATATGAAATTTTGGTAACC
66175 CTTATGGCCG
Statistics
Matches: 129, Mismatches: 16, Indels: 19
0.79 0.10 0.12
Matches are distributed among these distances:
43 4 0.03
44 96 0.74
45 27 0.21
46 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (42 bp):
CCATATGAAATTTTGGTAACCTCCTATGAAATTTTGGTAACT
Found at i:66160 original size:22 final size:21
Alignment explanation
Indices: 65980--66180 Score: 151
Period size: 22 Copynumber: 9.2 Consensus size: 21
65970 ATGGATACCA
* *
65980 TATGAAATTTTGGTAACCTACA
1 TATGAAATTTTGGTAA-CTCCT
*
66002 TATGAAATTTTTGTTAA-TCACAT
1 TATGAAA-TTTTGGTAACTC-C-T
* *
66025 TATGAAATTTTGTTCATCTCCT
1 TATGAAATTTTGGT-AACTCCT
* *
66047 TATGAAATTTTCGTAACCTCCA
1 TATGAAATTTTGGTAA-CTCCT
66069 TATGAAATTTTGGTAACCTCGC-
1 TATGAAATTTTGGTAA-CTC-CT
66091 TATGAAATTTTGGTAACTTCGC-
1 TATGAAATTTTGGTAAC-TC-CT
**
66113 TATGAAATTTCAGTAACCTCAC-
1 TATGAAATTTTGGTAA-CTC-CT
66135 TATGAAATTTTGGTAACTGCCT
1 TATGAAATTTTGGTAACT-CCT
* *
66157 TATGTAATTTTTGTAAC-CCT
1 TATGAAATTTTGGTAACTCCT
66177 TATG
1 TATG
66181 GCCGTGATAG
Statistics
Matches: 152, Mismatches: 16, Indels: 24
0.79 0.08 0.12
Matches are distributed among these distances:
20 7 0.05
21 6 0.04
22 118 0.78
23 19 0.12
24 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.13, T:0.41
Consensus pattern (21 bp):
TATGAAATTTTGGTAACTCCT
Found at i:66173 original size:66 final size:66
Alignment explanation
Indices: 65980--66151 Score: 190
Period size: 66 Copynumber: 2.6 Consensus size: 66
65970 ATGGATACCA
* * * * * ** * *
65980 TATGAAATTTTGGTAACCTACATATGAAATTTTTGTTAATCACATTATGAAATTTTGTTCA-TCT
1 TATGAAATTTTCGTAACCTCCATATGAAA-TTTTGGTAACCTCGCTATGAAATTTTGGTAACT-T
66044 C-C
64 CGC
66046 TTATGAAATTTTCGTAACCTCCATATGAAATTTTGGTAACCTCGCTATGAAATTTTGGTAACTTC
1 -TATGAAATTTTCGTAACCTCCATATGAAATTTTGGTAACCTCGCTATGAAATTTTGGTAACTTC
66111 GC
65 GC
66113 TATGAAA-TTTCAGTAACCT-CACTATGAAATTTTGGTAAC
1 TATGAAATTTTC-GTAACCTCCA-TATGAAATTTTGGTAAC
66152 TGCCTTATGT
Statistics
Matches: 92, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
65 6 0.07
66 57 0.62
67 29 0.32
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.40
Consensus pattern (66 bp):
TATGAAATTTTCGTAACCTCCATATGAAATTTTGGTAACCTCGCTATGAAATTTTGGTAACTTCG
C
Found at i:67780 original size:336 final size:333
Alignment explanation
Indices: 67072--68484 Score: 1548
Period size: 334 Copynumber: 4.2 Consensus size: 333
67062 GCCAAATACA
* * *** * * * * **
67072 TAAAATTTTGCAAAAAATTGACCCGAAATTTTTTTTCTCAA-ATTTTGGCCACATTACTCATAAA
1 TAAAATTTAGCAAAAAATTGACCAGAAAAACTTTTCCTCAATTTTTTGGCCAAAATACTCATTGA
* * * * * * *
67136 AAATATATAATTGAATGTCAAAAACAATGAAGGG-TTGTTCACGCTTCTAACATCGTTTTTCCTA
66 AAATTTATAATTCAAGGCCAAAAAGATTGAAGGGCTT-TTCACGCTTCTAATATCGTTTTTCCTA
* * * * * *
67200 TTTTTTTCGAATTAATTTCTAATTAAATTGAAAGTGCTTTTTGATGCT-AAAAAAACAAAACCTT
130 TGTTTTTCGAATTAATTTCTAATTAAATCGAAATTGGTTTCTGATGCTCAAAAAAA-AAATCCTT
* * * * * ** * *
67264 ATATCCAACGTGACTGAGATTTGGTTAGTTTAATA-A-ATATTTCAAGGAGTTTTGGTGCCAAAA
194 ATGTCCAATGTGGCTTAGATTTGGTTACTCGAATATAGATATTTCAAGGAGTCTTGGCGCCAAAA
* * * * * *
67327 ATCATGCAAAACTGAG-CTAGGGCCCGTAACGCGATTTTAGCGAAAAACTGTGATGATTAATACA
259 ATCATGCAAAACAGAGCCGAGGCCCCGAAACGCGTTTTTAGCGAAAAACTGTGATGATTACTACA
* *
67391 CAATTTTGAC
324 CGATTTCGAC
* *** *
67401 TAAAATTTTGCAAAAAAATTGA-CACGAAATTTTTTTCCTCAA-TTTGTGGCCAAAATACTCATT
1 TAAAATTTAGC-AAAAAATTGACCA-GAAAAACTTTTCCTCAATTTTTTGGCCAAAATACTCATT
* *
67464 GGAAAA-ATATAATTCAAGG-AAAACAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTC
64 -GAAAATTTATAATTCAAGGCCAAA-AAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTC
*
67527 CTATGTTTTTCTGAATTAATTTCTAATTAAATCGGAATTGGTTTCTGATGCTCGAAAAAAAAAGA
127 CTATGTTTTTC-GAATTAATTTCTAATTAAATCGAAATTGGTTTCTGATGCTC--AAAAAAAA-A
* * * * *
67592 ATCCTTACGTCCAATGTGGCTTAGATTTGGCTACTCAAATTTAGATATTTCAAGGA-TACTTGAC
188 ATCCTTATGTCCAATGTGGCTTAGATTTGGTTACTCGAATATAGATATTTCAAGGAGT-CTTGGC
* * *
67656 CCCAAAAATAATGCAAAACAGAGCCGAGGCCCCGAAACGCGTTTTTAGCGAAAAACTATGATGAT
252 GCCAAAAATCATGCAAAACAGAGCCGAGGCCCCGAAACGCGTTTTTAGCGAAAAACTGTGATGAT
*
67721 TATTACACGATTTCGAC
317 TACTACACGATTTCGAC
* * *
67738 TAAAATTT-GTCATAAAATTGATCAGAAAATA-TTTTCCTCAA-TTTTTGGCCAAAATACTCACT
1 TAAAATTTAG-CAAAAAATTGACCAGAAAA-ACTTTTCCTCAATTTTTTGGCCAAAATACTCATT
* * ** * *
67800 GAAAATTTATAATTTAAGGCCAAAAAGATTAAAGGGCTTTAAATGCTCCTAATATCGTTTTTCCT
64 GAAAATTTATAATTCAAGGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCT
* * * **
67865 ATGTTTTCCCGAATTAATTTTTAATTAAATCGAAACTGGTTTCTGATGCTTGAAAAAAAAATCCT
129 ATGTTTT-TCGAATTAATTTCTAATTAAATCGAAATTGGTTTCTGATGCTCAAAAAAAAAATCCT
* * * *
67930 TATGTCCAATGTGG-TTCAGATTTGGTTTCTCGAATATAGATATCTCAAGGAATCTTGGCACCAA
193 TATGTCCAATGTGGCTT-AGATTTGGTTACTCGAATATAGATATTTCAAGGAGTCTTGGCGCCAA
* * * * *
67994 AAATCCTGCAAAAGTA-AGCCGGGGCCTCGGAACGCGTTTTTAGCGAAAAACTGTGATGATTACT
257 AAATCATGCAAAA-CAGAGCCGAGGCCCCGAAACGCGTTTTTAGCGAAAAACTGTGATGATTACT
68058 ACACGATTTCGAC
321 ACACGATTTCGAC
* * * * * * *
68071 TAAAATTTAGCAAAAAATTTACCCGAAAAATTTTTCTTCAATTTTTTTGCTAAAATACTGATTGA
1 TAAAATTTAGCAAAAAATTGACCAGAAAAACTTTTCCTCAATTTTTTGGCCAAAATACTCATTGA
* * *
68136 AAATTTATAATTAAAGGCCAAAAAGAATGAAGGGCTTTTCACGCTTCTAATTTCGTTTTTCCTAT
66 AAATTTATAATTCAAGGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTAT
* * * *
68201 GTTTTTCAGAATTAATATT-TGATTAAATCGAAATCGGTTTCTAATGCTCCAAAAAAAAATCCTT
131 GTTTTTC-GAATTAAT-TTCTAATTAAATCGAAATTGGTTTCTGATGCTCAAAAAAAAAATCCTT
* * * *
68265 ATGTACAAAGTGGCTTAGATTTGGTTAATTGAATATAGATATTTCAAGGAGTCTTGGCGCCAAAA
194 ATGTCCAATGTGGCTTAGATTTGGTTACTCGAATATAGATATTTCAAGGAGTCTTGGCGCCAAAA
* * * * * *
68330 ATCATGCAAACCAGAGCTG-GGGCCCTAGAACGCATTTTTAGCGAAAAACTGTGATGGTTACTAC
259 ATCATGCAAAACAGAGCCGAGGCCCCGA-AACGCGTTTTTAGCGAAAAACTGTGATGATTACTAC
68394 ACGATTTCGAC
323 ACGATTTCGAC
* * * *
68405 TAAAATTTAGCAAAAAATTGACCCGAAAAACTTTTCTTCAATTTTTTTGCAAAAATACTCATTGA
1 TAAAATTTAGCAAAAAATTGACCAGAAAAACTTTTCCTCAATTTTTTGGCCAAAATACTCATTGA
68470 AAATTTATAATTCAA
66 AAATTTATAATTCAA
68485 TTCTATGTTT
Statistics
Matches: 926, Mismatches: 127, Indels: 57
0.83 0.11 0.05
Matches are distributed among these distances:
329 15 0.02
330 96 0.10
331 41 0.04
332 3 0.00
333 163 0.18
334 363 0.39
335 11 0.01
336 169 0.18
337 65 0.07
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.34
Consensus pattern (333 bp):
TAAAATTTAGCAAAAAATTGACCAGAAAAACTTTTCCTCAATTTTTTGGCCAAAATACTCATTGA
AAATTTATAATTCAAGGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTAT
GTTTTTCGAATTAATTTCTAATTAAATCGAAATTGGTTTCTGATGCTCAAAAAAAAAATCCTTAT
GTCCAATGTGGCTTAGATTTGGTTACTCGAATATAGATATTTCAAGGAGTCTTGGCGCCAAAAAT
CATGCAAAACAGAGCCGAGGCCCCGAAACGCGTTTTTAGCGAAAAACTGTGATGATTACTACACG
ATTTCGAC
Found at i:68717 original size:290 final size:289
Alignment explanation
Indices: 68197--68773 Score: 819
Period size: 290 Copynumber: 2.0 Consensus size: 289
68187 TTCGTTTTTC
*
68197 CTATGTTTTTCAGAATTAATATTTGATTAAATCGAAATCGGTTTCTAATGCTCCAAAAAAAAATC
1 CTATGTTTTTCAGAATTAATATTTAATTAAATCGAAATCGGTTTCTAATGCTCCAAAAAAAAATC
* * * *
68262 CTTATGTACAAAGTGGCTTAGATTTGGTTAATTGAATATAGATATTTCAAGGAGTCTTGGCGCCA
66 CTTATGTACAAAGTGGCTTAGATTTGGCTAATCGAATATAGATATTTCAAGGAGTCTTGACGCAA
* * * *
68327 AAAATCATGCAAACCAGAGCTGGGGCCCTAGAACGCATTTTTAGCGAAAAACTGTGATGGTTACT
131 AAAATCATGCAAAACAGAGCCGGGCCCCGAGAACGCATTTTTAGCGAAAAACTGTGATGGTTACT
* *
68392 ACACGATTTCGACTAAAATTTAGCAAAAAATTGACCCGAAAAACTTTT-CTTCAATTTTTTTGCA
196 ACACGATTTCGACTAAAATTTAGCAAAAAATTGACCCGAAAAAATTTTCCTT-AA-TTTTTGGCA
68456 AAAATACTCATTGAAAATTTATAATTCAATT
259 AAAATACTCATTGAAAATTTATAATTCAATT
* *
68487 CTATGTTTTTCCGAATTAAT-TTCTAATTAAATCGAAA-CAGGTTTCTGAA-GCTCGAAAAAAAA
1 CTATGTTTTTCAGAATTAATATT-TAATTAAATCGAAATC-GGTTTCT-AATGCTCCAAAAAAAA
* *
68549 ATCCTTATGT-CTAATGTGGCTTAGATTTGGCTACTCGAATATAGATATTTCAAGGAGTCTTGAC
63 ATCCTTATGTAC-AAAGTGGCTTAGATTTGGCTAATCGAATATAGATATTTCAAGGAGTCTTGAC
* * *
68613 GCAAAAAATCATGCAAAACAGAGCCGAGTCCCCGA-AACG-AGTTTTTAGCGAAAAACTTTGATT
127 GCAAAAAATCATGCAAAACAGAGCCG-GGCCCCGAGAACGCA-TTTTTAGCGAAAAACTGTGATG
* *
68676 GTTACTACACGATTTCGAGTAAAATTTTTG-AAAAAATTGACCCGAAAAAATTTTCCTTAATTTT
190 GTTACTACACGATTTCGACTAAAA-TTTAGCAAAAAATTGACCCGAAAAAATTTTCCTTAATTTT
* *
68740 TGGCCAAAATACTCATTTAAAATTTATAATTCAA
254 TGGCAAAAATACTCATTGAAAATTTATAATTCAA
68774 GGCCAAAAAT
Statistics
Matches: 257, Mismatches: 22, Indels: 17
0.87 0.07 0.06
Matches are distributed among these distances:
289 40 0.16
290 203 0.79
291 14 0.05
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (289 bp):
CTATGTTTTTCAGAATTAATATTTAATTAAATCGAAATCGGTTTCTAATGCTCCAAAAAAAAATC
CTTATGTACAAAGTGGCTTAGATTTGGCTAATCGAATATAGATATTTCAAGGAGTCTTGACGCAA
AAAATCATGCAAAACAGAGCCGGGCCCCGAGAACGCATTTTTAGCGAAAAACTGTGATGGTTACT
ACACGATTTCGACTAAAATTTAGCAAAAAATTGACCCGAAAAAATTTTCCTTAATTTTTGGCAAA
AATACTCATTGAAAATTTATAATTCAATT
Found at i:69106 original size:334 final size:330
Alignment explanation
Indices: 68487--71295 Score: 3630
Period size: 332 Copynumber: 8.4 Consensus size: 330
68477 TAATTCAATT
* *
68487 CTATGTTTTTCCGAATTAATTTCTAATTAAATCGAAACAGGTTTCTGAAGCTCGAAAAAAAAATC
1 CTATGTTTTTCCGAATTAATTTCTAATTAAATCGAAACTGGTTTCTGATGCTCGAAAAAAAAATC
* * * * *
68552 CTTATGTCTAATGTGGCTTAGATTTGGCTACTCGAATATAGATATTTCAAGGAGTCTTGACGCAA
66 CTTATGTCCAACGTGGCTTAGATTTGGTTACTCGAATATAGATATTTCAAGGAGTCTTGGCGCCA
* * * *
68617 AAAATCATGCAAAACAGAGCCGAGTCCCCGAAACGAGTTTTTAGCGAAAAACTTTGATTG-TTAC
131 AAAATCATGCAAAACAGAGCCGGGT-CCCGGAACGCGTTTTTAGCGAAAAACTGTGA-TGATTAC
* * * *
68681 TACACGATTTCGAGTAAAATTTTTG-AAAAAATTGACCCGAAAAAATTTTCCTTAATTTTTGGCC
194 TACATGATTTCGACTAAAA-TTTAGCAAAAAATTGATCC--AAAAATTTTCCTTAATTTTTGGCC
* * * *
68745 AAAATACTCATTTAAAATTTATAATTCAAGGCCAAAAATATTGAAGGGCTTTGAATGCTTATAAT
256 AAAATACTCATTGAAAATTTATAATTCAAGGCCAAAAAGATTGAAGGGCTTTAAATGCTTCTAAT
68810 ATCGTTTTTC
321 ATCGTTTTTC
* * * * * *
68820 CTCTGTTTTTCTGAATTAATTTCTAATTAAATAGAAACTGGTTTCCGTTGCTCGGAAAAAAAATC
1 CTATGTTTTTCCGAATTAATTTCTAATTAAATCGAAACTGGTTTCTGATGCTCGAAAAAAAAATC
* *
68885 CTTATGTCCAACGTGGCTTAGATTTGGTTACGCGAATATATGATATTTCAAGGAGTCTTGGCGCA
66 CTTATGTCCAACGTGGCTTAGATTTGGTTACTCGAATATA-GATATTTCAAGGAGTCTTGGCGCC
* * ** * *
68950 AAAAATCATGCTAAACAAAGATGGGTCCTCGGAACGCGTTTTTAGCGAAAAATTGTGATGGTTAC
130 AAAAATCATGCAAAACAGAGCCGGGTCC-CGGAACGCGTTTTTAGCGAAAAACTGTGATGATTAC
* **
69015 TACATGATTTCGACTAAAATTTAGCAAAAAATTGA-CCTAAAAAATTTTTCGTTAATTTTTTTCC
194 TACATGATTTCGACTAAAATTTAGCAAAAAATTGATCC--AAAAA-TTTTCCTTAATTTTTGGCC
* * * * ** * *
69079 AAAATACTCAATGAAATTTTTTAATTCAAGGCCAAAAAGAATGAAGGGCTTTTTCACGTTTCTAA
256 AAAATACTCATTGAAAATTTATAATTCAAGGCCAAAAAGATTGAAGGGC-TTTAAATGCTTCTAA
*
69144 TTTCGTTTTTC
320 TATCGTTTTTC
* *
69155 CTATGTTTTTCAGAATTAATATT-TGATTAAATCGAAA-TCGGTTTCTGATGCTCGAAAAAAAAT
1 CTATGTTTTTCCGAATTAAT-TTCTAATTAAATCGAAACT-GGTTTCTGATGCTCGAAAAAAAA-
* * * **
69218 ATCCTTATGTCCAAAGTGGCTTATATTCGGTTACTTTAATATAGATATTTCAAGGAGTCTTGGCG
63 ATCCTTATGTCCAACGTGGCTTAGATTTGGTTACTCGAATATAGATATTTCAAGGAGTCTTGGCG
* * * * *
69283 CCAAAAATTATGCAAAACAGAGCCCGGGTCCCGAAAAC-CATTTTTAGCAAAAAACTTTGATGAT
128 CCAAAAATCATGCAAAACAGAG-CCGGGTCCCG-GAACGCGTTTTTAGCGAAAAACTGTGATGAT
* * * * *
69347 TATTACATGATTTTGACTAAAATTTAGCAAAAAATTGATCC-GAAATTTCCCTCAATTTTTGGCC
191 TACTACATGATTTCGACTAAAATTTAGCAAAAAATTGATCCAAAAATTTTCCTTAATTTTTGGCC
* * * ** *
69411 AAAAGACTCATTGAAAATTAATAATTCAAGGCCAAATAGATTGAAGGGCTTTTCACGCTTCTAAT
256 AAAATACTCATTGAAAATTTATAATTCAAGGCCAAAAAGATTGAAGGGCTTTAAATGCTTCTAAT
*
69476 TTCGATTTTTC
321 ATCG-TTTTTC
69487 CTATGTTTTTCCGAATTAATTTCTAATTAAATCGAAACTGGTTTCTGATGCTCGAAAAAAAAAAT
1 CTATGTTTTTCCGAATTAATTTCTAATTAAATCGAAACTGGTTTCTGATGCTCG-AAAAAAAAAT
*
69552 CCTTATGTCCAACGTGTCTTAGATTTGGTTACTCGAATATAGATATTTCAAGGAGTCTTGGCGCC
65 CCTTATGTCCAACGTGGCTTAGATTTGGTTACTCGAATATAGATATTTCAAGGAGTCTTGGCGCC
*
69617 AAAAATCATGCAAAACAGAGCCGGGGTCCCGGAAAC-CATTTTTAGCGAAAAACTGTGATGATTA
130 AAAAATCATGCAAAACAGAGCC-GGGTCCCGG-AACGCGTTTTTAGCGAAAAACTGTGATGATTA
** * *
69681 CTACATGATTTTAACTAAAATTTAGCAAAAAATTGATCC-AAAATTTCCCTCAATTTTTGGCCAA
193 CTACATGATTTCGACTAAAATTTAGCAAAAAATTGATCCAAAAATTTTCCTTAATTTTTGGCCAA
* *
69745 AAGACTCATTGAAAATTTATAATTCAAGGCCAAAAAGATTGAAGGGCATTT-AA-CCTATCTAAT
258 AATACTCATTGAAAATTTATAATTCAAGGCCAAAAAGATTGAAGGGC-TTTAAATGCT-TCTAAT
*
69808 TTCGTTTTTC
321 ATCGTTTTTC
* *
69818 CTATGTTTTTCCGAATTAATTTCTAATTAAATCGAAACTGGTTTCTAATGATCGAAAAAAAAATC
1 CTATGTTTTTCCGAATTAATTTCTAATTAAATCGAAACTGGTTTCTGATGCTCGAAAAAAAAATC
* * * * * * * ** *
69883 CTTATGTCCAATGTGACTTAGATATGGCTACTTGAATGTAGGTATTTCATTGAGTCTTAGCGCCA
66 CTTATGTCCAACGTGGCTTAGATTTGGTTACTCGAATATAGATATTTCAAGGAGTCTTGGCGCCA
* * *
69948 AAAATCATGCAAAACAGAGTCC-GGTCACCGGAACGCGTTTTTAGCGAAAAACTGTGCTGGTTAG
131 AAAATCATGCAAAACAGAG-CCGGGTC-CCGGAACGCGTTTTTAGCGAAAAACTGTGATGATTAC
* * *
70012 TACAGGATTTCGACTAAAATTTTAG-AAAAAATTGA-CCTGAAAAATTTTTCCATAGTTTTTGGC
194 TACATGATTTCGACTAAAA-TTTAGCAAAAAATTGATCC--AAAAA-TTTTCCTTAATTTTTGGC
* * * * *
70075 CAAAATTCTCTTTTAAAATTTATAAGTCAAGGCCAAAAAGATTGAAGGGCTTTCAATGCTTCTAA
255 CAAAATACTCATTGAAAATTTATAATTCAAGGCCAAAAAGATTGAAGGGCTTTAAATGCTTCTAA
*
70140 TATCGATTTTC
320 TATCGTTTTTC
*
70151 CTATGTTTTTTCGAATTAATTTCTAATTAAATCGAAACTGGTTTCTGATGCTCGAAAAAAAAATC
1 CTATGTTTTTCCGAATTAATTTCTAATTAAATCGAAACTGGTTTCTGATGCTCGAAAAAAAAATC
*
70216 CTTATGTCCAACATGGCTTAGATTTGGTTACTCGAATATAGATATTTCAAGGAGTCTTGGCGCCA
66 CTTATGTCCAACGTGGCTTAGATTTGGTTACTCGAATATAGATATTTCAAGGAGTCTTGGCGCCA
* *
70281 AAAATCATGCAAAACAGAGCTGGGTCGCCGGAAACGCATTTTTAGCGAAAAACTGTGATGATTAC
131 AAAATCATGCAAAACAGAGCCGGGTC-CCGG-AACGCGTTTTTAGCGAAAAACTGTGATGATTAC
** * * *
70346 TACATGATTTTAACTAAAATTTAGCAAAAAATTGATCC-GAAATTTCCCTCAATTTTTGGCCAAA
194 TACATGATTTCGACTAAAATTTAGCAAAAAATTGATCCAAAAATTTTCCTTAATTTTTGGCCAAA
* * * *
70410 AGACTCATTGAAAATTAATAATTCAAGGCCAAAAAGATTGAAGGGCATTTAAAT-TTTCTAATTT
259 ATACTCATTGAAAATTTATAATTCAAGGCCAAAAAGATTGAAGGGC-TTTAAATGCTTCTAATAT
70474 CGTTTTTC
323 CGTTTTTC
* * * *
70482 CTATGTTTTTACGAATTAATTTCTAATTAAATCGAAACAGGTTTCTGAAGCACG--AAAAAAATC
1 CTATGTTTTTCCGAATTAATTTCTAATTAAATCGAAACTGGTTTCTGATGCTCGAAAAAAAAATC
* * * * *
70545 CTTATGTCCAATGTGGCTTAGATTTGGCTACTCGAATATAGATATTTCAAAGAATCTTGGCGCAA
66 CTTATGTCCAACGTGGCTTAGATTTGGTTACTCGAATATAGATATTTCAAGGAGTCTTGGCGCCA
* * * * * *
70610 AAAATCAGGCAAAACAGAGCCGAGTCCCCGGAACGTGTTTTTAGCAAAAAAACTTTGATGGTTAC
131 AAAATCATGCAAAACAGAGCCGGGT-CCCGGAACGCGTTTTTAGC-GAAAAACTGTGATGATTAC
* * * * * *
70675 TACACGATTTCGAGTAAAATTTTGGAAAAAATTGATCCAGAAAAAATTTCTTTAATTTTCT-GCC
194 TACATGATTTCGACTAAAATTTAGCAAAAAATTGATCC--AAAAATTTTCCTTAATTTT-TGGCC
* *
70739 AAAACACTCATTTAAAATTTATAATTCAAGGCCAAAAAGATTGAAGGGCTTTAAATGCTTCTAAT
256 AAAATACTCATTGAAAATTTATAATTCAAGGCCAAAAAGATTGAAGGGCTTTAAATGCTTCTAAT
70804 ATCGTTTTTC
321 ATCGTTTTTC
* * *
70814 CTATGTTTTTCCGAATTAATTTCTAATTAAATAGAAACTGCTTTCTGATGCTCGAAAAAAAAATT
1 CTATGTTTTTCCGAATTAATTTCTAATTAAATCGAAACTGGTTTCTGATGCTCGAAAAAAAAATC
* * * *
70879 CTTATGTCCAACGTGGCTTAGATTTGGTTACTTGAATATAGATATTTCAAAGAGATTTTAGCGCC
66 CTTATGTCCAACGTGGCTTAGATTTGGTTACTCGAATATAGATATTTCAAGGAG-TCTTGGCGCC
* *
70944 AAAAATCATGCAAAACAGAGACGGGTCACTGGAACGCGTTTTTAGCGAAAAAACTGTGATGATTA
130 AAAAATCATGCAAAACAGAGCCGGGTC-CCGGAACGCGTTTTTAGCG-AAAAACTGTGATGATTA
* * *
71009 CTACACGATTTCGACTAAAATTTTTG-AAAAAATTGACCCGAAAAATTTTCCTTAATTTTTGGCC
193 CTACATGATTTCGACTAAAA-TTTAGCAAAAAATTGATCC-AAAAATTTTCCTTAATTTTTGGCC
* * * *
71073 AAAATACTTTC-TT-AAAATTTATAAGTCAAGGCCAAAAAGATAGAAGGGCTTTCAATTCTTCTA
256 AAAATAC--TCATTGAAAATTTATAATTCAAGGCCAAAAAGATTGAAGGGCTTTAAATGCTTCTA
71136 ATATC-TATTTTC
319 ATATCGT-TTTTC
*
71148 CTATGTTTTTCCGAATTAATTTCTAATTAAATCGAAACTGGTTTTTGATGCTCGAAAAAAAAATC
1 CTATGTTTTTCCGAATTAATTTCTAATTAAATCGAAACTGGTTTCTGATGCTCGAAAAAAAAATC
* * *
71213 CTTATGTCAAATGTGGCTTAGATTTGGTTACTCGAATATAGATATTTCAAGGAATCTTGGCGCCA
66 CTTATGTCCAACGTGGCTTAGATTTGGTTACTCGAATATAGATATTTCAAGGAGTCTTGGCGCCA
*
71278 AAAATCATGCAAAGCAGA
131 AAAATCATGCAAAACAGA
Statistics
Matches: 2177, Mismatches: 247, Indels: 104
0.86 0.10 0.04
Matches are distributed among these distances:
328 12 0.01
329 151 0.07
330 141 0.06
331 220 0.10
332 486 0.22
333 376 0.17
334 469 0.22
335 265 0.12
336 57 0.03
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (330 bp):
CTATGTTTTTCCGAATTAATTTCTAATTAAATCGAAACTGGTTTCTGATGCTCGAAAAAAAAATC
CTTATGTCCAACGTGGCTTAGATTTGGTTACTCGAATATAGATATTTCAAGGAGTCTTGGCGCCA
AAAATCATGCAAAACAGAGCCGGGTCCCGGAACGCGTTTTTAGCGAAAAACTGTGATGATTACTA
CATGATTTCGACTAAAATTTAGCAAAAAATTGATCCAAAAATTTTCCTTAATTTTTGGCCAAAAT
ACTCATTGAAAATTTATAATTCAAGGCCAAAAAGATTGAAGGGCTTTAAATGCTTCTAATATCGT
TTTTC
Done.