Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010511.1 Corchorus capsularis cultivar CVL-1 contig10532, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148180

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12795--12820
3
8.7
3
100
0
52
0
65
0
34
0.93
17276--17305
13
2.2
14
94
5
53
90
0
10
0
0.47
17276--17305
14
2.1
14
93
0
51
90
0
10
0
0.47
17272--17305
13
2.8
12
82
8
50
85
0
14
0
0.60
24655--24679
1
25.0
1
100
0
50
100
0
0
0
0.00
25999--26127
64
2.0
64
95
0
231
41
18
17
21
1.90
29401--29444
22
2.0
23
82
8
56
65
11
9
13
1.46
42554--42584
16
1.9
16
100
0
62
35
19
12
32
1.90
50310--50338
2
15.0
2
92
7
51
51
0
0
48
1.00
51132--51165
7
4.9
7
100
0
68
44
0
26
29
1.55
52508--52532
13
1.9
13
100
0
50
8
0
8
84
0.79
55563--55620
29
2.0
30
86
3
82
43
10
22
24
1.84
61414--61438
7
3.6
7
100
0
50
12
16
44
28
1.83
66992--67026
2
17.5
2
100
0
70
51
0
0
48
1.00
85164--85201
11
3.5
11
89
10
51
39
0
2
57
1.12
101482--101521
21
1.9
21
85
10
55
27
0
22
50
1.50
102425--102449
13
1.9
13
100
0
50
0
52
0
48
1.00
112479--112589
56
2.0
56
94
0
195
42
18
15
24
1.88
115565--115625
31
1.9
32
86
3
88
45
3
3
47
1.35
117288--117370
32
2.6
32
81
7
96
31
7
13
48
1.69
118795--118866
32
2.2
32
90
0
117
31
9
9
48
1.69
134271--134301
13
2.5
13
94
5
55
35
16
22
25
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
134461--134485
9
2.8
9
100
0
50
12
0
0
88
0.53
135302--135337
10
3.6
10
92
0
63
30
5
22
41
1.76
135299--135337
20
2.0
20
100
0
78
30
5
20
43
1.73
135448--135486
12
3.6
12
74
25
50
30
15
28
25
1.96
146517--146546
15
2.0
15
93
0
51
83
0
0
16
0.65
147855--147893
2
19.5
2
100
0
78
51
0
0
48
1.00

Tables:   1

The End!