Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010515.1 Corchorus capsularis cultivar CVL-1 contig10536, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159500

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16--2454
326
7.5
319
79
7
2537
32
15
16
35
1.90
16--2417
646
3.7
642
82
7
2687
33
15
16
35
1.90
3468--3525
29
2.0
29
93
6
100
43
12
20
24
1.86
25364--25389
2
13.0
2
100
0
52
50
0
0
50
1.00
29678--29708
15
2.1
15
100
0
62
45
6
6
41
1.55
32554--32616
31
2.1
30
82
11
76
25
12
22
39
1.89
36052--36141
45
2.0
45
87
8
130
25
8
16
48
1.75
48318--48368
27
1.9
26
88
11
77
19
15
5
58
1.57
52298--52363
34
1.9
34
96
0
123
21
24
21
33
1.97
64778--64834
29
1.9
30
89
3
89
45
17
15
21
1.85
64789--64852
29
2.2
29
80
5
76
46
18
14
20
1.83
65495--65613
54
2.2
54
81
0
148
22
24
26
26
2.00
72252--72280
13
2.1
14
93
6
51
24
0
27
48
1.51
77838--77872
11
3.2
11
91
0
61
0
2
17
80
0.84
89773--89806
2
17.0
2
100
0
68
50
0
0
50
1.00
102727--102809
28
2.8
28
85
12
105
20
20
13
45
1.84
112783--112831
2
24.5
2
100
0
98
51
0
48
0
1.00
113029--113068
18
2.3
18
87
12
57
0
5
45
50
1.23
132607--132671
34
1.9
34
87
0
94
35
24
4
35
1.76
133422--133454
2
16.5
2
100
0
66
48
0
0
51
1.00
146720--146745
3
8.7
3
100
0
52
65
0
0
34
0.93
147694--147768
29
2.6
29
89
4
107
52
13
16
18
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
147694--147779
29
3.0
28
80
9
77
54
11
15
18
1.70
148914--149019
51
2.1
52
89
1
160
46
7
19
26
1.77
150425--150488
33
1.9
33
96
0
119
17
23
23
35
1.95

Tables:   1

The End!