Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010516.1 Corchorus capsularis cultivar CVL-1 contig10537, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53546

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2171--2203
11
2.9
11
95
4
57
3
9
0
87
0.63
23165--23196
1
32.0
1
100
0
64
0
0
0
100
0.00
42300--42329
1
30.0
1
100
0
60
0
0
0
100
0.00
43681--43870
95
2.0
95
100
0
380
29
17
17
34
1.94
44894--44980
45
1.9
45
80
0
102
24
26
18
31
1.98
45459--45507
24
2.0
24
96
0
89
4
26
22
46
1.69
45466--45516
24
2.2
23
82
6
59
3
31
23
41
1.73
45522--45588
35
1.9
35
93
0
116
7
32
25
34
1.84
45557--45887
50
6.8
50
86
6
462
7
33
23
35
1.84
45563--45887
148
2.2
145
90
1
488
8
32
23
35
1.84
45563--45887
98
3.3
99
88
6
468
8
32
23
35
1.84
47810--47841
2
16.0
2
100
0
64
50
0
0
50
1.00
47107--49417
325
7.1
323
83
6
2734
35
16
14
34
1.88
49415--50947
324
4.8
323
88
3
2183
33
17
14
33
1.90
50371--51523
575
2.0
575
88
3
1743
33
18
14
34
1.91
50946--52266
323
4.1
317
83
5
1580
33
17
14
34
1.90
52272--53535
319
4.0
318
83
5
1593
34
17
13
34
1.89
52272--53546
640
2.0
639
85
4
1746
34
17
13
34
1.89

Tables:   1

The End!