Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010518.1 Corchorus capsularis cultivar CVL-1 contig10539, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11415
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34


Found at i:3112 original size:2 final size:2

Alignment explanation


    Indices: 3105--3131  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

       3095 CCATTTGAAA

                                                    
       3105 AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT A

       3132 ATTTTGTAGC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Found at i:5837 original size:22 final size:24

Alignment explanation


    Indices: 5809--5856  Score: 64
    Period size: 25  Copynumber: 2.0  Consensus size: 24

       5799 AAAAAAAAAC

                                    
       5809 TTTTTTTT-T-CAGGTAAACAACT
          1 TTTTTTTTATCCAGGTAAACAACT

                                 *   
       5831 TTTTTTTTATCCCAGGTAAACCACT
          1 TTTTTTTTAT-CCAGGTAAACAACT

             
       5856 T
          1 T

       5857 CATTCATAAA


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  22    8  0.36
  23    1  0.05
  25   13  0.59

ACGTcount: A:0.25, C:0.19, G:0.08, T:0.48


Consensus pattern (24 bp):   
TTTTTTTTATCCAGGTAAACAACT
Done.