genome.fa.s10520.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010520.1 Corchorus capsularis cultivar CVL-1 contig10541, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  205443

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18965--19076	3	37.3	3	82	13	52	0	18	36	44	1.50
18964--19044	21	3.7	21	91	5	117	0	17	37	45	1.48
18964--19076	24	4.6	24	87	10	165	0	18	36	45	1.50
18965--19076	27	4.4	27	83	15	141	0	18	36	44	1.50
21623--21648	12	2.2	12	100	0	52	0	23	34	42	1.54
30969--31008	13	3.2	13	82	3	55	27	0	0	72	0.85
30966--31001	16	2.2	16	90	0	54	30	0	0	69	0.89
42785--42827	21	2.0	21	100	0	86	27	4	18	48	1.68
50985--51014	14	2.2	13	94	5	51	0	16	0	83	0.65
54579--54621	21	2.0	21	100	0	86	37	20	0	41	1.53
66371--66409	1	39.0	1	100	0	78	100	0	0	0	0.00
67329--67357	12	2.3	13	94	5	51	34	31	0	34	1.58
71465--71621	74	2.1	74	89	4	237	21	28	9	40	1.84
73725--73786	29	2.2	29	88	2	90	20	22	14	41	1.89
75125--75210	45	1.9	45	90	0	136	32	11	39	16	1.84
100486--100513	1	28.0	1	100	0	56	100	0	0	0	0.00
105101--105130	14	2.1	14	93	0	51	20	13	13	53	1.72
111899--111982	42	2.0	42	97	0	159	34	26	7	32	1.83
116547--116594	24	2.0	25	88	12	73	58	0	0	41	0.98
116544--116593	13	3.8	13	82	10	57	56	0	0	44	0.99
116759--116789	16	2.0	16	93	6	55	61	0	12	25	1.32
118266--118308	22	2.0	22	81	9	52	69	4	11	13	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118525--118560	18	2.0	19	89	10	58	66	5	2	25	1.27
126383--126418	2	18.5	2	94	5	65	50	0	0	50	1.00
163924--164069	43	3.1	43	64	25	107	39	17	5	38	1.73
163883--164076	97	2.0	97	100	0	388	39	18	5	37	1.73
164677--164714	2	19.0	2	100	0	76	50	0	0	50	1.00
171389--171414	8	3.2	8	100	0	52	23	11	11	53	1.69
183467--183509	1	43.0	1	100	0	86	0	0	0	100	0.00
186856--186885	1	30.0	1	93	0	51	0	0	3	96	0.21
198650--198808	79	2.0	79	95	2	284	35	17	15	31	1.92
200311--200937	22	29.0	22	68	13	236	35	16	9	39	1.80
200618--200702	23	3.7	23	84	1	100	37	14	7	41	1.73
200976--201140	22	7.6	22	75	9	90	35	12	8	43	1.73
201104--201203	21	4.5	22	72	15	82	32	13	11	44	1.78
201226--201561	22	15.5	20	70	17	119	36	17	9	36	1.82
201379--201562	22	8.3	22	75	13	162	38	17	9	34	1.83
201728--201765	19	2.0	20	85	15	53	63	2	5	28	1.30
201892--201940	15	3.5	15	68	21	52	57	0	8	34	1.29
201959--202025	31	2.1	32	83	10	93	44	4	17	32	1.69
201966--202031	31	2.1	32	88	5	100	45	4	21	28	1.71
203101--205439	324	7.3	322	85	3	2773	35	17	13	33	1.89

Tables:   1

The End!