Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010521.1 Corchorus capsularis cultivar CVL-1 contig10542, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36159

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1464
322
4.5
323
84
4
1643
34
16
15
32
1.91
1--1474
652
2.3
647
82
5
1750
34
16
15
32
1.91
10670--10709
21
1.9
21
100
0
80
55
2
15
27
1.53
10584--10792
105
2.0
105
97
0
393
41
5
12
40
1.67
11845--11927
43
1.9
43
90
0
130
44
18
16
20
1.87
15392--15422
15
2.1
15
94
5
55
38
6
19
35
1.77
15832--15864
16
2.1
16
100
0
66
36
12
12
39
1.80
15920--15995
36
2.1
36
95
0
134
10
36
14
38
1.81
17666--17719
27
2.0
27
100
0
108
29
14
3
51
1.60
17674--17722
14
3.6
14
72
5
55
28
14
4
53
1.59
17673--17730
27
2.1
27
84
6
73
32
12
5
50
1.62
19538--19721
92
2.0
92
93
0
314
28
14
32
25
1.95
21126--21176
28
1.9
26
84
11
68
39
7
15
37
1.77
26357--26456
50
2.0
50
100
0
200
28
20
12
40
1.87
30306--30378
30
2.4
30
95
0
128
19
10
35
34
1.87
33122--33184
33
1.9
33
90
6
101
15
34
34
14
1.88

Tables:   1

The End!