Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010523.1 Corchorus capsularis cultivar CVL-1 contig10544, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24012

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
177--216
21
1.9
21
89
0
62
32
10
37
20
1.85
4523--4792
146
1.8
146
87
1
398
32
16
8
42
1.78
4671--4785
43
2.7
43
81
0
140
29
18
8
43
1.80
4947--5062
43
2.7
43
87
1
162
28
18
9
43
1.82
5027--5219
100
1.9
100
83
7
248
39
11
10
38
1.76
7137--7165
6
4.8
6
100
0
58
86
0
13
0
0.58
10606--10633
2
14.0
2
100
0
56
50
0
0
50
1.00
12151--12246
31
3.1
31
83
1
102
33
23
22
19
1.97

Tables:   1

The End!