Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010530.1 Corchorus capsularis cultivar CVL-1 contig10551, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3483
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29


Found at i:2838 original size:20 final size:22

Alignment explanation


    Indices: 2789--2839  Score: 61
    Period size: 20  Copynumber: 2.4  Consensus size: 22

       2779 CAAATTATGC

                                  
       2789 ATGTTTTTATAGCTATTTTTAT
          1 ATGTTTTTATAGCTATTTTTAT

              **                  
       2811 ATACTTTT-T-GCTATTTTTAT
          1 ATGTTTTTATAGCTATTTTTAT

            *        
       2831 GTGTTTTTA
          1 ATGTTTTTA

       2840 CCCTATTTTG


Statistics
Matches: 23,  Mismatches: 5, Indels: 3
        0.74            0.16        0.10

Matches are distributed among these distances:
  20   16  0.70
  21    1  0.04
  22    6  0.26

ACGTcount: A:0.20, C:0.06, G:0.10, T:0.65


Consensus pattern (22 bp):   
ATGTTTTTATAGCTATTTTTAT
Done.