Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010534.1 Corchorus capsularis cultivar CVL-1 contig10555, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72768

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
766--793
13
2.2
13
100
0
56
39
7
7
46
1.59
2333--2367
17
2.1
17
89
5
54
60
8
25
5
1.49
3478--3533
28
2.0
28
96
0
103
23
17
5
53
1.64
6849--6879
2
15.5
2
93
0
53
54
0
0
45
0.99
23265--23292
1
28.0
1
100
0
56
0
0
0
100
0.00
31092--31126
2
16.5
2
91
5
52
48
2
2
45
1.32
43891--44335
196
2.3
197
92
4
738
26
23
24
25
2.00
43891--44335
99
4.5
99
93
2
736
26
23
24
25
2.00
49353--49383
2
15.5
2
100
0
62
48
0
0
51
1.00
59548--59585
18
2.1
19
90
5
60
10
47
18
23
1.79
62176--62301
62
2.0
63
96
3
236
63
3
14
19
1.43
63416--63446
14
2.2
14
94
0
53
32
0
12
54
1.38
64339--64441
49
2.1
49
100
0
206
26
15
7
50
1.71
64759--64817
28
2.1
28
100
0
118
45
3
16
33
1.64
68141--68173
2
16.5
2
100
0
66
48
0
0
51
1.00
70010--70171
83
2.0
80
86
6
227
33
7
9
48
1.64
71846--71994
77
2.0
73
88
7
219
37
14
13
34
1.86

Tables:   1

The End!