Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01010536.1 Corchorus capsularis cultivar CVL-1 contig10557, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7447
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.30
Found at i:749 original size:322 final size:320
Alignment explanation
Indices: 1--2250 Score: 2969
Period size: 322 Copynumber: 7.0 Consensus size: 320
* * ** *
1 ACAATACTCGGAAAAATATATAACTCAAAGCAAAAAATTTTGAAAGG-TTTTCACGTTTACAATA
1 ACAATACTCGGAAAAATATATAATTCAACGCAAAAAAAATTGAAAGGTTTTTCACGCTTACAATA
* * *
65 TCGTTTTTCCATTTTTTCGAAATTATTTCTAATTAAATCAAAACAAAATTAAGATGCCCGTAAAA
66 TCGTTTTTCCATTTTTTCGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGCCCGTAAAG
* ***
130 ACAAATCCTTAAATCCATTGTAGCTGAGATTTCGTTCGATGAATGGTGATATTTCAAGGAGGCTT
131 ACAAATCCTTAAATCCATTGTGGCTGAGATTTCGTTCGATGAATACAGATATTTCAAGGAGGCTT
* *
195 TCAGCCAAAAATCATGTAAAACTGAGTCGGGTCCCCGAAACGCGTTTTTAGCCCCTAAACCGTGA
196 TCAGCCAAAAATCATGCAAAACTGAGCCGGGTCCCCGAAACGCGTTTTTAG-CCCTAAACCGTGA
*
260 --G--A-TACACGATTTCGGCTAAAAA-TGGACCCGGAAATTTTTTTTCTCAAAAATTTGCC
260 TGGTTAGTACACGATTTCGGCTAAAAAGT-GACCCGAAAATTTTTTTTCTCAAAAATTTGCC
* * *
316 ACGATACTCAGAAAAATATATAATTCAACGCAAAAAAAAATTGAAAGGTTTTTCACGCTTAGAAT
1 ACAATACTCGGAAAAATATATAATTCAACGC-AAAAAAAATTGAAAGGTTTTTCACGCTTACAAT
* * *
381 ATCGTTTTTCCATTTTTTCGAATTTATTTTTAATTAAATGAAAACAAAATTCAGATGCCCATAAA
65 ATCGTTTTTCCATTTTTTCGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGCCCGTAAA
* * * *
446 GACAAATCCTTAAATCCATTGTAGTTGAGATTTCATTCGATGACTACAGATATTTCAAGGAGGCT
130 GACAAATCCTTAAATCCATTGTGGCTGAGATTTCGTTCGATGAATACAGATATTTCAAGGAGGCT
*
511 TTCAGCCAAAAATCATGCAAAACTGAGCCGGGTCCCCGAAACGCGTTTTTAGCCCTTAAAACGTG
195 TTCAGCCAAAAATCATGCAAAACTGAGCCGGGTCCCCGAAACGCGTTTTTAGCCC-TAAACCGTG
** *
576 ACAGTTAGTACACGATTTCGGCTAAAAAGTGACCCGAAAATTTTTTTTCTCAAAAATTTGGC
259 ATGGTTAGTACACGATTTCGGCTAAAAAGTGACCCGAAAATTTTTTTTCTCAAAAATTTGCC
* * *
638 ACAATACTCGGAAAAATATATAATTCAATGCAGGAAAAAATTGAAAGGTTTTTAACGCTTACAAT
1 ACAATACTCGGAAAAATATATAATTCAACGCA-AAAAAAATTGAAAGGTTTTTCACGCTTACAAT
* * *
703 ATCGTTTTTCC-TTTTTTACGAATTTATATCTAATTAATTCAAAACAAAATTCAGATGACCGTAA
65 ATCGTTTTTCCATTTTTT-CGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGCCCGTAA
* * *
767 AGACAAATCTTTAAATCCATGGTGGCTGAGATTTCGTTCGATGAATACAAATATTTCAAGGAGGC
129 AGACAAATCCTTAAATCCATTGTGGCTGAGATTTCGTTCGATGAATACAGATATTTCAAGGAGGC
*
832 TTTCAGCCAAAAATCATGCAAAACTGAGCCGGGTCCCCGAAACGCGTTTTTAGGCCTTAAACCGT
194 TTTCAGCCAAAAATCATGCAAAACTGAGCCGGGTCCCCGAAACGCGTTTTTA-GCCCTAAACCGT
* *
897 GATGGTTAGTACACGATTTCAGCTATAAAGTGACCCGAAAATTTTTTTTTCTCAAAAATTTGCC
258 GATGGTTAGTACACGATTTCGGCTAAAAAGTGACCCGAAAA-TTTTTTTTCTCAAAAATTTGCC
* *
961 ACAACACTCGGAAAAATATATAATTCAACGCCAAAAAAAATTGAAA-GTGTTTTCACGCTTATAA
1 ACAATACTCGGAAAAATATATAATTCAACG-CAAAAAAAATTGAAAGGT-TTTTCACGCTTACAA
* * * *
1025 TATCGTTTTTCCTTTTTTTTCGAATTTATTTCTATTTAAATCAAAACAAAATTCAGATGGCCATA
64 TATCGTTTTTCC-ATTTTTTCGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGCCCGTA
* * * *
1090 AAGACAAATCATTAAATCCATTGTGACTGAGATTTTGTTCGATGAATACAGATATTTTAAGGAGG
128 AAGACAAATCCTTAAATCCATTGTGGCTGAGATTTCGTTCGATGAATACAGATATTTCAAGGAGG
* * **
1155 CTTTCAGCCAAAAATCATGCAAAACTGTGCTGGGTCCCCGAGTCGCGTTTTTAGCCCTTAAACCG
193 CTTTCAGCCAAAAATCATGCAAAACTGAGCCGGGTCCCCGAAACGCGTTTTTAGCCC-TAAACCG
* * *
1220 TGATGGTTAGTACACGATTTCGGCTAAAAAGTGACCGGAAAAAATTTTTTTCTCAAAAAGTTGCC
257 TGATGGTTAGTACACGATTTCGGCTAAAAAGTGACCCG-AAAATTTTTTTTCTCAAAAATTTGCC
* * * *
1285 ACAATACTCGGAAAAATATATTATTCAACGCAAAAAAAA-TGAAAGG--ATTCTCGGTTACAATA
1 ACAATACTCGGAAAAATATATAATTCAACGCAAAAAAAATTGAAAGGTTTTTCACGCTTACAATA
*
1347 TCGTTTTTCC-GTTTTTCTGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGCCCGTAAA
66 TCGTTTTTCCATTTTTTC-GAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGCCCGTAAA
* *
1411 GACAAATCCTTAAATACATTGTGGCTGAGATTTCGTTCGATGATTACAGATATTTCAAGGAGGCT
130 GACAAATCCTTAAATCCATTGTGGCTGAGATTTCGTTCGATGAATACAGATATTTCAAGGAGGCT
* * *
1476 ATCAGCCAAAAATCATGCAAAACTGAGCCGGATCCCCGAAACGCGTTTTTAGCCCTAGAACCATG
195 TTCAGCCAAAAATCATGCAAAACTGAGCCGGGTCCCCGAAACGCGTTTTTAGCCCTA-AACCGTG
* *
1541 ATGGTTAGTTCACGATTTCGGCTAAAAAGTTG-CCTGAAAATTTTTTTTTCTCAAAAATTTGCC
259 ATGGTTAGTACACGATTTCGGCTAAAAAG-TGACCCGAAAA-TTTTTTTTCTCAAAAATTTGCC
* ** * * * ** * * *
1604 ACAATAGTTTGAAAAATATATAATTCAACAC-ATAAAAATTTAAATTTTTTTCACTCTTTCAATT
1 ACAATACTCGGAAAAATATATAATTCAACGCAAAAAAAATTGAAAGGTTTTTCACGCTTACAATA
* * * *
1668 TCGTTTTTCCATTTTTTCCGAATTTATTTCTAATTAAATTAAAACAAAATTCTGATTCTCGTAAA
66 TCGTTTTTCCATTTTTT-CGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGCCCGTAAA
* * * * * * *
1733 AACAAATCTTTAAATCCATTGTGGCTGGGTTTTTGTTCGATGAATATAGATATTACAAGGAGGCT
130 GACAAATCCTTAAATCCATTGTGGCTGAGATTTCGTTCGATGAATACAGATATTTCAAGGAGGCT
* * * * * * * *
1798 TTCTGCCAAAAATCATACAAGATTGAGACGGTTCCCCAAAACGCGTTTTTAGCCCAAAAACCGTG
195 TTCAGCCAAAAATCATGCAAAACTGAGCCGGGTCCCCGAAACGCGTTTTTAGCCC-TAAACCGTG
* *** * * *
1863 ATGGTTAATACACGATTTTTCCTAAAAATTGGCCCGAAAAATTTTTTTCTCAAAAATTTGCC
259 ATGGTTAGTACACGATTTCGGCTAAAAAGTGACCCGAAAATTTTTTTTCTCAAAAATTTGCC
* * * *
1925 ATAATACTCGGAAAATTATATAATTCAACGCAGAAAAAAATTGAAAGGTTTTTCAGGCGTACAAT
1 ACAATACTCGGAAAAATATATAATTCAACGCA-AAAAAAATTGAAAGGTTTTTCACGCTTACAAT
* * *
1990 ATCGTTTTTCCATTTTTCCGAATTTTTTTCTAATTAAATCAAAACAAAA-TCAGATGCTCGTAAA
65 ATCGTTTTTCCATTTTTTCGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGCCCGTAAA
* * * *
2054 GACAAATCCTTAAATCCATTGTGGTTGAGATTTCGTTCGATGAATACAGATATTCCAAAGAGGTT
130 GACAAATCCTTAAATCCATTGTGGCTGAGATTTCGTTCGATGAATACAGATATTTCAAGGAGGCT
* * ** * *
2119 TTCTGCCAAAAATCATGCAAAACTGAGCCGGATCCCTAAAACCCGTTTTTAGCCCAAAAACCGTG
195 TTCAGCCAAAAATCATGCAAAACTGAGCCGGGTCCCCGAAACGCGTTTTTAGCCC-TAAACCGTG
* ** * * ** *
2184 A-CG-TA-T--ACGATTTCGAATAAAAAATGACCTG-ATTTTTTTTTTCTCAAAAAGTTGCC
259 ATGGTTAGTACACGATTTCGGCTAAAAAGTGACCCGAAAATTTTTTTTCTCAAAAATTTGCC
2240 ACAATACTCGG
1 ACAATACTCGG
2251 TTACAATATC
Statistics
Matches: 1701, Mismatches: 201, Indels: 66
0.86 0.10 0.03
Matches are distributed among these distances:
315 58 0.03
316 35 0.02
317 191 0.11
318 19 0.01
319 241 0.14
320 25 0.01
321 203 0.12
322 534 0.31
323 145 0.09
324 240 0.14
325 10 0.01
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (320 bp):
ACAATACTCGGAAAAATATATAATTCAACGCAAAAAAAATTGAAAGGTTTTTCACGCTTACAATA
TCGTTTTTCCATTTTTTCGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGCCCGTAAAG
ACAAATCCTTAAATCCATTGTGGCTGAGATTTCGTTCGATGAATACAGATATTTCAAGGAGGCTT
TCAGCCAAAAATCATGCAAAACTGAGCCGGGTCCCCGAAACGCGTTTTTAGCCCTAAACCGTGAT
GGTTAGTACACGATTTCGGCTAAAAAGTGACCCGAAAATTTTTTTTCTCAAAAATTTGCC
Found at i:1596 original size:643 final size:641
Alignment explanation
Indices: 1--2248 Score: 2948
Period size: 643 Copynumber: 3.5 Consensus size: 641
* * ** * *
1 ACAATACTCGGAAAAATATATAACTCAAAGCA-AAAAATTTTGAAAGGTTTTCACGTTTACAATA
1 ACAATACTCGGAAAAATATATAATTCAACGCAGAAAAA-AATGAAAGG-TTTCTCGGTTACAATA
* *
65 TCGTTTTTCCATTTTT-TCGAAATTATTTCTAATTAAATCAAAACAAAATTAAGATGCCCGTAAA
64 TCGTTTTTCCATTTTTCT-GAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGCCCGTAAA
* * ***
129 AACAAATCCTTAAATCCATTGTAGCTGAGATTTCGTTCGATGAATGGTGATATTTCAAGGAGGCT
128 GACAAATCCTTAAATCCATTGTGGCTGAGATTTCGTTCGATGAATACAGATATTTCAAGGAGGCT
* * *
194 TTCAGCCAAAAATCATGTAAAACTGAGTCGGGTCCCCGAAACGCGTTTTTAGCCCCTAAACCGTG
193 TTCAGCCAAAAATCATGCAAAACTGAGCCGGATCCCCGAAACGCGTTTTTAG-CCCTAAACCGTG
* *
259 A--G--A-TACACGATTTCGGCTAAAAA-TGGACCCGGAAA-TTTTTTTTCTCAAAAATTTGCCA
257 ATGGTTAGTACACGATTTCGGCTAAAAAGTTGACCCGAAAATTTTTTTTTCTCAAAAATTTGCCA
* * *
317 CGATACTCAGAAAAATATATAATTCAACGCAAAAAAAAATTGAAAG-GTTTTTCACGCTTAGAAT
322 CAATACTCAGAAAAATATATAATTCAACGCCAAAAAAAATTGAAAGTG-TTTTCACGCTTATAAT
* * *
381 ATCGTTTTTCCATTTTTTCGAATTTATTTTTAATTAAATGAAAACAAAATTCAGATGCCCATAAA
386 ATCGTTTTTCCTTTTTTTCGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGCCCATAAA
* * ** *
446 GACAAATCCTTAAATCCATTGT-AGTTGAGATTTCATTCGATGACTACAGATATTTCAAGGAGGC
451 GACAAATCATTAAATCCATTGTGA-CTGAGATTTTGTTCGATGAATACAGATATTTCAAGGAGGC
*
510 TTTCAGCCAAAAATCATGCAAAACTGAGCCGGGTCCCCGAAACGCGTTTTTAGCCCTTAAAACGT
515 TTTCAGCCAAAAATCATGCAAAACTGAG-CGGGTCCCCGAAACGCGTTTTTAGCCCTTAAACCGT
** * *
575 GACAGTTAGTACACGATTTCGGCTAAAAAGTGACCCGAAAATTTTTTTTCTCAAAAATTTGGC
579 GATGGTTAGTACACGATTTCGGCTAAAAAGTGACCCGAAAAATTTTTTTCTCAAAAATTTGCC
* * * *
638 ACAATACTCGGAAAAATATATAATTCAATGCAGGAAAAAATTGAAAGGTTTTTAACGCTTACAAT
1 ACAATACTCGGAAAAATATATAATTCAACGCA-GAAAAAAATGAAAGGTTTCT--CGGTTACAAT
* * * *
703 ATCGTTTTTCCTTTTTTAC-GAATTTATATCTAATTAATTCAAAACAAAATTCAGATGACCGTAA
63 ATCGTTTTTCCATTTTT-CTGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGCCCGTAA
* * *
767 AGACAAATCTTTAAATCCATGGTGGCTGAGATTTCGTTCGATGAATACAAATATTTCAAGGAGGC
127 AGACAAATCCTTAAATCCATTGTGGCTGAGATTTCGTTCGATGAATACAGATATTTCAAGGAGGC
* *
832 TTTCAGCCAAAAATCATGCAAAACTGAGCCGGGTCCCCGAAACGCGTTTTTAGGCCTTAAACCGT
192 TTTCAGCCAAAAATCATGCAAAACTGAGCCGGATCCCCGAAACGCGTTTTTA-GCCCTAAACCGT
* *
897 GATGGTTAGTACACGATTTCAGCTATAAAG-TGACCCGAAAATTTTTTTTTCTCAAAAATTTGCC
256 GATGGTTAGTACACGATTTCGGCTAAAAAGTTGACCCGAAAATTTTTTTTTCTCAAAAATTTGCC
* *
961 ACAACACTCGGAAAAATATATAATTCAACGCCAAAAAAAATTGAAAGTGTTTTCACGCTTATAAT
321 ACAATACTCAGAAAAATATATAATTCAACGCCAAAAAAAATTGAAAGTGTTTTCACGCTTATAAT
* *
1026 ATCGTTTTTCCTTTTTTTTCGAATTTATTTCTATTTAAATCAAAACAAAATTCAGATGGCCATAA
386 ATCGTTTTTCC-TTTTTTTCGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGCCCATAA
*
1091 AGACAAATCATTAAATCCATTGTGACTGAGATTTTGTTCGATGAATACAGATATTTTAAGGAGGC
450 AGACAAATCATTAAATCCATTGTGACTGAGATTTTGTTCGATGAATACAGATATTTCAAGGAGGC
* **
1156 TTTCAGCCAAAAATCATGCAAAACTGTGCTGGGTCCCCGAGTCGCGTTTTTAGCCCTTAAACCGT
515 TTTCAGCCAAAAATCATGCAAAACTGAGC-GGGTCCCCGAAACGCGTTTTTAGCCCTTAAACCGT
* *
1221 GATGGTTAGTACACGATTTCGGCTAAAAAGTGACCGGAAAAAATTTTTTTCTCAAAAAGTTGCC
579 GATGGTTAGTACACGATTTCGGCTAAAAAGTGACCCG-AAAAATTTTTTTCTCAAAAATTTGCC
* *
1285 ACAATACTCGGAAAAATATATTATTCAACGCA-AAAAAAATGAAAGGATTCTCGGTTACAATATC
1 ACAATACTCGGAAAAATATATAATTCAACGCAGAAAAAAATGAAAGGTTTCTCGGTTACAATATC
*
1349 GTTTTTCCGTTTTTCTGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGCCCGTAAAGAC
66 GTTTTTCCATTTTTCTGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGCCCGTAAAGAC
* * *
1414 AAATCCTTAAATACATTGTGGCTGAGATTTCGTTCGATGATTACAGATATTTCAAGGAGGCTATC
131 AAATCCTTAAATCCATTGTGGCTGAGATTTCGTTCGATGAATACAGATATTTCAAGGAGGCTTTC
*
1479 AGCCAAAAATCATGCAAAACTGAGCCGGATCCCCGAAACGCGTTTTTAGCCCTAGAACCATGATG
196 AGCCAAAAATCATGCAAAACTGAGCCGGATCCCCGAAACGCGTTTTTAGCCCTA-AACCGTGATG
* *
1544 GTTAGTTCACGATTTCGGCTAAAAAGTTG-CCTGAAAATTTTTTTTTCTCAAAAATTTGCCACAA
260 GTTAGTACACGATTTCGGCTAAAAAGTTGACCCGAAAATTTTTTTTTCTCAAAAATTTGCCACAA
* ** * * * * * * *
1608 TAGTTTGAAAAATATATAATTCAAC-AC-ATAAAAATTTAAATTTTTTTCACTCTT-TCAATTTC
325 TACTCAGAAAAATATATAATTCAACGCCAAAAAAAATTGAAAGTGTTTTCACGCTTAT-AATATC
* * * * * * *
1670 GTTTTTCCATTTTTTCCGAATTTATTTCTAATTAAATTAAAACAAAATTCTGATTCTCGTAAAAA
389 GTTTTTCC-TTTTTTTCGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGCCCATAAAGA
* * * * * *
1735 CAAATCTTTAAATCCATTGTGGCTGGGTTTTTGTTCGATGAATATAGATATTACAAGGAGGCTTT
453 CAAATCATTAAATCCATTGTGACTGAGATTTTGTTCGATGAATACAGATATTTCAAGGAGGCTTT
* * * * * * **
1800 CTGCCAAAAATCATACAAGATTGAGACGGTTCCCCAAAACGCGTTTTTAGCCCAAAAACCGTGAT
518 CAGCCAAAAATCATGCAAAACTGAG-CGGGTCCCCGAAACGCGTTTTTAGCCCTTAAACCGTGAT
* *** * *
1865 GGTTAATACACGATTTTTCCTAAAAATTGGCCCGAAAAATTTTTTTCTCAAAAATTTGCC
582 GGTTAGTACACGATTTCGGCTAAAAAGTGACCCGAAAAATTTTTTTCTCAAAAATTTGCC
* * * *
1925 ATAATACTCGGAAAATTATATAATTCAACGCAGAAAAAAATTGAAAGGTTTTTCAGGCGTACAAT
1 ACAATACTCGGAAAAATATATAATTCAACGCAGAAAAAAA-TGAAAGGTTTCTC-GG-TTACAAT
* * *
1990 ATCGTTTTTCCATTTTTCCGAATTTTTTTCTAATTAAATCAAAACAAAA-TCAGATGCTCGTAAA
63 ATCGTTTTTCCATTTTTCTGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGCCCGTAAA
* * * *
2054 GACAAATCCTTAAATCCATTGTGGTTGAGATTTCGTTCGATGAATACAGATATTCCAAAGAGGTT
128 GACAAATCCTTAAATCCATTGTGGCTGAGATTTCGTTCGATGAATACAGATATTTCAAGGAGGCT
* ** * *
2119 TTCTGCCAAAAATCATGCAAAACTGAGCCGGATCCCTAAAACCCGTTTTTAGCCCAAAAACCGTG
193 TTCAGCCAAAAATCATGCAAAACTGAGCCGGATCCCCGAAACGCGTTTTTAGCCC-TAAACCGTG
* ** * * * *
2184 A-CG-TA-T--ACGATTTCGAATAAAAA-ATGACCTG--ATTTTTTTTTTCTCAAAAAGTTGCCA
257 ATGGTTAGTACACGATTTCGGCTAAAAAGTTGACCCGAAAATTTTTTTTTCTCAAAAATTTGCCA
2241 CAATACTC
322 CAATACTC
2249 GGTTACAATA
Statistics
Matches: 1427, Mismatches: 154, Indels: 61
0.87 0.09 0.04
Matches are distributed among these distances:
636 30 0.02
637 35 0.02
638 27 0.02
639 189 0.13
640 57 0.04
641 229 0.16
642 20 0.01
643 397 0.28
644 82 0.06
645 108 0.08
646 199 0.14
647 54 0.04
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (641 bp):
ACAATACTCGGAAAAATATATAATTCAACGCAGAAAAAAATGAAAGGTTTCTCGGTTACAATATC
GTTTTTCCATTTTTCTGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGCCCGTAAAGAC
AAATCCTTAAATCCATTGTGGCTGAGATTTCGTTCGATGAATACAGATATTTCAAGGAGGCTTTC
AGCCAAAAATCATGCAAAACTGAGCCGGATCCCCGAAACGCGTTTTTAGCCCTAAACCGTGATGG
TTAGTACACGATTTCGGCTAAAAAGTTGACCCGAAAATTTTTTTTTCTCAAAAATTTGCCACAAT
ACTCAGAAAAATATATAATTCAACGCCAAAAAAAATTGAAAGTGTTTTCACGCTTATAATATCGT
TTTTCCTTTTTTTCGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGCCCATAAAGACAA
ATCATTAAATCCATTGTGACTGAGATTTTGTTCGATGAATACAGATATTTCAAGGAGGCTTTCAG
CCAAAAATCATGCAAAACTGAGCGGGTCCCCGAAACGCGTTTTTAGCCCTTAAACCGTGATGGTT
AGTACACGATTTCGGCTAAAAAGTGACCCGAAAAATTTTTTTCTCAAAAATTTGCC
Found at i:1901 original size:965 final size:956
Alignment explanation
Indices: 1--2250 Score: 3058
Period size: 965 Copynumber: 2.3 Consensus size: 956
* * ** *
1 ACAATACTCGGAAAAATATATAACTCAAAGCAAAAAATTTTGAAAGGTTTTCACGTTTACAATAT
1 ACAATACTCGGAAAAATATATAATTCAACGCAAAAAAAATTGAAAGGTTTTCACGCTTACAATAT
* * * *
66 CGTTTTTCCATTTTTTCGAAATTATTTCTAATTAAATCAAAACAAAATTAAGATGCCCGTAAAAA
66 CGTTTTTCCATTTTTTCGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGGCCGTAAAGA
***
131 CAAATCCTTAAATCCATTGT-AGCTGAGATTTCGTTCGATGAATGGTGATATTTCAAGGAGGCTT
131 CAAATCCTTAAATCCATTGTGA-CTGAGATTTCGTTCGATGAATACAGATATTTCAAGGAGGCTT
* *
195 TCAGCCAAAAATCATGTAAAACTGAG-TCGGGTCCCCGAAACGCGTTTTTAGCCCCTAAACCGTG
195 TCAGCCAAAAATCATGCAAAACTGAGCT-GGGTCCCCGAAACGCGTTTTTAGCCCATAAACCGTG
* *
259 AG-ATACACGATTTCGGCTAAAAATGGACCCGGAAATTTTTTTTCTCAAAAATTTGCCACGATAC
259 AGTATACACGATTTCGGCTAAAAAT-GA-CCGGAAATTTTTTTTCTCAAAAAGTTGCCACAATAC
* * *
323 TCAGAAAAATATATAATTCAACGCAAAAAAAAATTGAAAGGTTTTTCACGCTTAGAATATCGTTT
322 TCGGAAAAATATATAATTCAACGCAAAAAAAAATTGAAAGG-TATTCACGCTTACAATATCGTTT
* *
388 TTCCATTTTTTCGAATTTATTTTTAATTAAATGAAAACAAAATTCAGATGCCCATAAAGACAAAT
386 TTCCATTTTTTCGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGCCCATAAAGACAAAT
* * *
453 CCTTAAATCCATTGTAGTTGAGATTTCATTCGATGACTACAGATATTTCAAGGAGGCTTTCAGCC
451 CCTTAAATACATTGTAGCTGAGATTTCATTCGATGACTACAGATATTTCAAGGAGGCTATCAGCC
* *
518 AAAAATCATGCAAAACTGAGCCGGGTCCCCGAAACGCGTTTTTAGCCCTTAAAACGTGACAGTTA
516 AAAAATCATGCAAAACTGAGCCGGATCCCCGAAACGCGTTTTTAGCCCTTAAAACATGACAGTTA
*
583 GTACACGATTTCGGCTAAAAAGTGACCCGAAAATTTTTTTTCTCAAAAATTTGGCACAATACTCG
581 GTACACGATTTCGGCTAAAAAGTGACCCGAAAATTTTTTTTCTCAAAAATTTGCCACAATACTCG
*
648 GAAAAATATATAATTCAATGCAGGAAAAAATTGAAAGGTTTTTAACGCTTACAATATCGTTTTTC
646 GAAAAATATATAATTCAA-GCAGCAAAAAATTGAAAGGTTTTTAACGCTTACAATATCGTTTTTC
*
713 CTTTTTTACGAATTTATATCTAATTAATTCAAAACAAAATTCAGATGACCGTAAAGACAAATCTT
710 CTTTTTTACGAATTTATATCTAATTAATTCAAAACAAAATTCAGATGACCGTAAAAACAAATCTT
*
778 TAAATCCATGGTGGCTGAGATTTCGTTCGATGAATACAAATATTTCAAGGAGGCTTTCAGCCAAA
775 TAAATCCATGGTGGCTGAGATTTCGTTCGATGAATACAAATATTACAAGGAGGCTTTCAGCCAAA
* * * * ** *
843 AATCATGCAAAACTGAGCCGGGTCCCCGAAACGCGTTTTTAGGCCTTAAACCGTGATGGTTAGTA
840 AATCATACAAAACTGAGACGGGTCCCCAAAACGCGTTTTTAGCCCAAAAACCGTGATGGTTAATA
* * *
908 CACGATTTCAGCTATAAAGTGACCCGAAAATTTTTTTTTCTCAAAAATTTGCC
905 CACGATTTCACCTAAAAAGTGACCCGAAAA-ATTTTTTTCTCAAAAATTTGCC
* *
961 ACAACACTCGGAAAAATATATAATTCAACGCCAAAAAAAATTGAAAGTGTTTTCACGCTTATAAT
1 ACAATACTCGGAAAAATATATAATTCAACG-CAAAAAAAATTGAAAG-GTTTTCACGCTTACAAT
* * *
1026 ATCGTTTTTCCTTTTTTTTCGAATTTATTTCTATTTAAATCAAAACAAAATTCAGATGGCCATAA
64 ATCGTTTTTCC-ATTTTTTCGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGGCCGTAA
* * *
1091 AGACAAATCATTAAATCCATTGTGACTGAGATTTTGTTCGATGAATACAGATATTTTAAGGAGGC
128 AGACAAATCCTTAAATCCATTGTGACTGAGATTTCGTTCGATGAATACAGATATTTCAAGGAGGC
* ** *
1156 TTTCAGCCAAAAATCATGCAAAACTGTGCTGGGTCCCCGAGTCGCGTTTTTAGCCCTTAAACCGT
193 TTTCAGCCAAAAATCATGCAAAACTGAGCTGGGTCCCCGAAACGCGTTTTTAGCCCATAAACCGT
*
1221 GATGGTTAGTACACGATTTCGGCTAAAAAGTGACCGGAAAAAATTTTTTTCTCAAAAAGTTGCCA
258 GA--G-TA-TACACGATTTCGGCTAAAAA-TGACCGG--AAATTTTTTTTCTCAAAAAGTTGCCA
* * *
1286 CAATACTCGGAAAAATATATTATTCAACGC-AAAAAAAA-TGAAAGG-ATTCTCGGTTACAATAT
316 CAATACTCGGAAAAATATATAATTCAACGCAAAAAAAAATTGAAAGGTATTCACGCTTACAATAT
* *
1348 CGTTTTTCC-GTTTTTCTGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGCCCGTAAAG
381 CGTTTTTCCATTTTTTC-GAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGCCCATAAAG
* * *
1412 ACAAATCCTTAAATACATTGTGGCTGAGATTTCGTTCGATGATTACAGATATTTCAAGGAGGCTA
445 ACAAATCCTTAAATACATTGTAGCTGAGATTTCATTCGATGACTACAGATATTTCAAGGAGGCTA
*
1477 TCAGCCAAAAATCATGCAAAACTGAGCCGGATCCCCGAAACGCGTTTTTAGCCC-TAGAACCATG
510 TCAGCCAAAAATCATGCAAAACTGAGCCGGATCCCCGAAACGCGTTTTTAGCCCTTA-AAACATG
** * *
1541 ATGGTTAGTTCACGATTTCGGCTAAAAAGTTG-CCTGAAAATTTTTTTTTCTCAAAAATTTGCCA
574 ACAGTTAGTACACGATTTCGGCTAAAAAG-TGACCCGAAAA-TTTTTTTTCTCAAAAATTTGCCA
* ** * ** * * * *
1605 CAATAGTTTGAAAAATATATAATTCAA-CA-CATAAAAATTTAAATTTTTTTCACTCTTTCAATT
637 CAATACTCGGAAAAATATATAATTCAAGCAGCA-AAAAATTGAAAGGTTTTTAACGCTTACAATA
* * * *
1668 TCGTTTTTCCATTTTTTCCGAATTTATTTCTAATTAAATT-AAAACAAAATTCTGAT-TCTCGTA
701 TCGTTTTTCC-TTTTTTACGAATTTATATCTAATT-AATTCAAAACAAAATTCAGATGAC-CGTA
* * * * * *
1731 AAAACAAATCTTTAAATCCATTGTGGCTGGGTTTTTGTTCGATGAATATAGATATTACAAGGAGG
763 AAAACAAATCTTTAAATCCATGGTGGCTGAGATTTCGTTCGATGAATACAAATATTACAAGGAGG
* * * *
1796 CTTTCTGCCAAAAATCATACAAGATTGAGACGGTTCCCCAAAACGCGTTTTTAGCCCAAAAACCG
828 CTTTCAGCCAAAAATCATACAAAACTGAGACGGGTCCCCAAAACGCGTTTTTAGCCCAAAAACCG
** * *
1861 TGATGGTTAATACACGATTTTTCCTAAAAATTGGCCCGAAAAATTTTTTTCTCAAAAATTTGCC
893 TGATGGTTAATACACGATTTCACCTAAAAAGTGACCCGAAAAATTTTTTTCTCAAAAATTTGCC
* * * *
1925 ATAATACTCGGAAAATTATATAATTCAACGCAGAAAAAAATTGAAAGGTTTTTCAGGCGTACAAT
1 ACAATACTCGGAAAAATATATAATTCAACGCA-AAAAAAATTGAAAGG-TTTTCACGCTTACAAT
* *
1990 ATCGTTTTTCCATTTTTCCGAATTTTTTTCTAATTAAATCAAAACAAAA-TCAGAT-GCTCGTAA
64 ATCGTTTTTCCATTTTTTCGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGGC-CGTAA
** * * *
2053 AGACAAATCCTTAAATCCATTGTGGTTGAGATTTCGTTCGATGAATACAGATATTCCAAAGAGGT
128 AGACAAATCCTTAAATCCATTGTGACTGAGATTTCGTTCGATGAATACAGATATTTCAAGGAGGC
* * * ** * *
2118 TTTCTGCCAAAAATCATGCAAAACTGAGCCGGATCCCTAAAACCCGTTTTTAGCCCAAAAACCGT
193 TTTCAGCCAAAAATCATGCAAAACTGAGCTGGGTCCCCGAAACGCGTTTTTAGCCCATAAACCGT
** * **
2183 GACGTAT--ACGATTTCGAATAAAAAATGACCTGATTTTTTTTTTCTCAAAAAGTTGCCACAATA
258 GA-GTATACACGATTTCGGCT-AAAAATGACCGGAAATTTTTTTTCTCAAAAAGTTGCCACAATA
2246 CTCGG
321 CTCGG
2251 TTACAATATC
Statistics
Matches: 1135, Mismatches: 130, Indels: 55
0.86 0.10 0.04
Matches are distributed among these distances:
955 33 0.03
957 16 0.01
958 5 0.00
959 1 0.00
960 29 0.03
961 17 0.01
962 149 0.13
963 201 0.18
964 133 0.12
965 405 0.36
966 52 0.05
967 12 0.01
968 30 0.03
969 52 0.05
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (956 bp):
ACAATACTCGGAAAAATATATAATTCAACGCAAAAAAAATTGAAAGGTTTTCACGCTTACAATAT
CGTTTTTCCATTTTTTCGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGGCCGTAAAGA
CAAATCCTTAAATCCATTGTGACTGAGATTTCGTTCGATGAATACAGATATTTCAAGGAGGCTTT
CAGCCAAAAATCATGCAAAACTGAGCTGGGTCCCCGAAACGCGTTTTTAGCCCATAAACCGTGAG
TATACACGATTTCGGCTAAAAATGACCGGAAATTTTTTTTCTCAAAAAGTTGCCACAATACTCGG
AAAAATATATAATTCAACGCAAAAAAAAATTGAAAGGTATTCACGCTTACAATATCGTTTTTCCA
TTTTTTCGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATGCCCATAAAGACAAATCCTTA
AATACATTGTAGCTGAGATTTCATTCGATGACTACAGATATTTCAAGGAGGCTATCAGCCAAAAA
TCATGCAAAACTGAGCCGGATCCCCGAAACGCGTTTTTAGCCCTTAAAACATGACAGTTAGTACA
CGATTTCGGCTAAAAAGTGACCCGAAAATTTTTTTTCTCAAAAATTTGCCACAATACTCGGAAAA
ATATATAATTCAAGCAGCAAAAAATTGAAAGGTTTTTAACGCTTACAATATCGTTTTTCCTTTTT
TACGAATTTATATCTAATTAATTCAAAACAAAATTCAGATGACCGTAAAAACAAATCTTTAAATC
CATGGTGGCTGAGATTTCGTTCGATGAATACAAATATTACAAGGAGGCTTTCAGCCAAAAATCAT
ACAAAACTGAGACGGGTCCCCAAAACGCGTTTTTAGCCCAAAAACCGTGATGGTTAATACACGAT
TTCACCTAAAAAGTGACCCGAAAAATTTTTTTCTCAAAAATTTGCC
Found at i:2876 original size:325 final size:321
Alignment explanation
Indices: 2251--3040 Score: 828
Period size: 325 Copynumber: 2.5 Consensus size: 321
2241 CAATACTCGG
* * *
2251 TTACAATATCGTTTTTCC-GTTTTTCTGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATG
1 TTACAATATCGTTTTCCCATTTTTTCCGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATG
* * * * * *
2315 CTCGTAAAAACAAATCTTTAAATCCATCGTGGCTGAGATTTTGTTCGATGGATACAGATTTTTCA
66 CTCGTAAAAACAAATCATTAAATCCATTGTGGCTGAGATTTGGTTCAATGAATACAGATGTTTCA
* *
2380 TGGAGGCTTTCTGCCAAAAATCATGCAAAACTGAGCCGTTCCCCCGTAACGCGAGTTTAGCCCAA
131 AGGAGGCTTTCTGCCAAAAATCATGCAAAACTGAGCCGTT-CCCCGAAACGCGAGTTTAGCCCAA
* * ** * * ** *****
2445 AAATGATTACAGTTAGTACACGCTTTTCGGCTAAAAAGTGACCCCAAATTTTTTTCCGAAAAATT
195 AAACGATGACAGACAGTACACGATTTTCGGCTAAAAAGAGACCAAAAAAAAAATTCCGAAAAATT
* *
2510 TGCCACAATACTCAGAAAAATATATAATTAATTGCAAAAAAAAAAATTGAAAGGTTTTTCACGC
260 TACCACAATACTCAGAAAAATATATAATTAATCGC--AAAAAAAAATTGAAAGGTTTTTCACGC
* *
2574 TTACAAATCTCGTTTTCCCATTTTTTCCGAATTTATTTCTAATTAAATCAAAACAAAATTCTGAT
1 TTAC-AATATCGTTTTCCCATTTTTTCCGAATTTATTTCTAATTAAATCAAAACAAAATTCAGAT
* * * * *
2639 CCTCGTCAAAACAAATCATTAAATCCATTGT-GCTTGGGATTTGGTTCTATGAATATAGATGTTT
65 GCTCGTAAAAACAAATCATTAAATCCATTGTGGC-TGAGATTTGGTTCAATGAATACAGATGTTT
* * * *
2703 GAAGGAGTG-TTTCTGTCAAAAATCATGCAAAACTGAGCCGGGTT-CCTGAAACGCGTGTTTAGC
129 CAAGGAG-GCTTTCTGCCAAAAATCATGCAAAACTGAGCC--GTTCCCCGAAACGCGAGTTTAGC
* ** * *
2766 TCAAAAACCG-TGATGGACA-TACATGATTTT-GGCTAAAAAGAGACTCAAAAAAAAAATTCTGA
191 CCAAAAA-CGATGACAGACAGTACACGATTTTCGGCTAAAAAGAGAC-CAAAAAAAAAATTCCGA
* ** * * * *
2828 GATTTTTACCACAATACTCGGAAAAAATATATAATTCCA-CGTAAAAAAAAATTGAAGGGTTTTT
254 AAAATTTACCACAATACTCAG-AAAAATATATAATT-AATCGCAAAAAAAAATTGAAAGGTTTTT
*
2892 TACGC
317 CACGC
* * * **
2897 TTACAATATCGTTTTTCCATTTTTT-CGAATTTCTTTCAAATTAAAT-AAAA-AATTTTTTCAGA
1 TTACAATATCGTTTTCCCATTTTTTCCGAATTTATTTCTAATTAAATCAAAACAA--AATTCAGA
* * * * *
2959 TGCTCGTAAAAACAGATCCTTAAATCCATTGTGGCTAAGATTTGGTTCAATGAATACAGGTTTTT
64 TGCTCGTAAAAACAAATCATTAAATCCATTGTGGCTGAGATTTGGTTCAATGAATACAGATGTTT
*
3024 CAAGGAGCCTTTCTGCC
129 CAAGGAGGCTTTCTGCC
3041 GGGTCCCTGA
Statistics
Matches: 384, Mismatches: 69, Indels: 30
0.80 0.14 0.06
Matches are distributed among these distances:
319 2 0.01
320 4 0.01
321 89 0.23
322 21 0.05
323 46 0.12
324 48 0.12
325 168 0.44
326 3 0.01
327 3 0.01
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (321 bp):
TTACAATATCGTTTTCCCATTTTTTCCGAATTTATTTCTAATTAAATCAAAACAAAATTCAGATG
CTCGTAAAAACAAATCATTAAATCCATTGTGGCTGAGATTTGGTTCAATGAATACAGATGTTTCA
AGGAGGCTTTCTGCCAAAAATCATGCAAAACTGAGCCGTTCCCCGAAACGCGAGTTTAGCCCAAA
AACGATGACAGACAGTACACGATTTTCGGCTAAAAAGAGACCAAAAAAAAAATTCCGAAAAATTT
ACCACAATACTCAGAAAAATATATAATTAATCGCAAAAAAAAATTGAAAGGTTTTTCACGC
Found at i:3625 original size:19 final size:19
Alignment explanation
Indices: 3587--3626 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
3577 AAATATATAA
* *
3587 TTCAACGTCAAAGAGATTT
1 TTCAACGCCAAAAAGATTT
*
3606 TTCAACGCCAAAAAGGTTT
1 TTCAACGCCAAAAAGATTT
3625 TT
1 TT
3627 TAATTAATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (19 bp):
TTCAACGCCAAAAAGATTT
Found at i:3827 original size:132 final size:132
Alignment explanation
Indices: 3644--3890 Score: 316
Period size: 132 Copynumber: 1.9 Consensus size: 132
3634 TTTCTGATGC
* ** ** * *
3644 AATCGAAACAAGATTCACAAGCTAGTAAAATCAAATTGTTAAATCGAATGTGGTTGAGATTTGGT
1 AATCAAAACAAGATTCACAAGCTAGTAAAAAAAAATTGTTAAATCGAATGTGACTAAGATTTAGT
* * *
3709 TCGATGCATATAAATATTTCAAGGAGTCTTTGCACCAAAAATCATGAAAATTGAGCTGGGACTCC
66 TAGATGAATATAAATATTTCAAGGAGTCTTTCCACCAAAAATCATGAAAATTGAGCTGGGACTCC
3774 GG
131 GG
* * * *
3776 AATCAAAACAAGATTCAGATGCTTGTAAAAAAAAATCT-TTAAATCTAATGTGACTAAGATTTAG
1 AATCAAAACAAGATTCACAAGCTAGTAAAAAAAAAT-TGTTAAATCGAATGTGACTAAGATTTAG
* ** *
3840 TTAGATGAATATAGATATTTCAAGGAGTCTTTCCGTCAAAACTCATGAAAA
65 TTAGATGAATATAAATATTTCAAGGAGTCTTTCCACCAAAAATCATGAAAA
3891 ACTGAGCCGT
Statistics
Matches: 96, Mismatches: 18, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
132 95 0.99
133 1 0.01
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.29
Consensus pattern (132 bp):
AATCAAAACAAGATTCACAAGCTAGTAAAAAAAAATTGTTAAATCGAATGTGACTAAGATTTAGT
TAGATGAATATAAATATTTCAAGGAGTCTTTCCACCAAAAATCATGAAAATTGAGCTGGGACTCC
GG
Found at i:4588 original size:14 final size:15
Alignment explanation
Indices: 4553--4604 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
4543 ATTATTATAA
4553 AATTA-AAAGTTTAAT
1 AATTATAAA-TTTAAT
4568 AATTATAAATTTAAT
1 AATTATAAATTTAAT
*
4583 -ATTAT-AATTCAAT
1 AATTATAAATTTAAT
4596 ATATTATAA
1 A-ATTATAA
4605 TCAAAAAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
13 7 0.22
14 5 0.16
15 16 0.50
16 4 0.12
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (15 bp):
AATTATAAATTTAAT
Found at i:5879 original size:53 final size:53
Alignment explanation
Indices: 5799--5982 Score: 323
Period size: 53 Copynumber: 3.5 Consensus size: 53
5789 GAACACGCAA
*
5799 AGACACGAAGCTACACGAGAAGACAGAGGCCACCGCAGTGAGGCGAGGCCAGC
1 AGACACGAAGCTACACGAGAAGACAGAGGCCTCCGCAGTGAGGCGAGGCCAGC
*
5852 AGACACGAAGCTACACGAGAAGACAGAGGCCTCCACAGTGAGGCGAGGCCAGC
1 AGACACGAAGCTACACGAGAAGACAGAGGCCTCCGCAGTGAGGCGAGGCCAGC
* * *
5905 AGACACGAATCTACACTAGAAGACAGAGACCTCCGCAGTGAGGCGAGGCCAGC
1 AGACACGAAGCTACACGAGAAGACAGAGGCCTCCGCAGTGAGGCGAGGCCAGC
5958 AGACACGAAGCTACACGAGAAGACA
1 AGACACGAAGCTACACGAGAAGACA
5983 CACACGAAGG
Statistics
Matches: 123, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 123 1.00
ACGTcount: A:0.36, C:0.28, G:0.30, T:0.06
Consensus pattern (53 bp):
AGACACGAAGCTACACGAGAAGACAGAGGCCTCCGCAGTGAGGCGAGGCCAGC
Found at i:5987 original size:24 final size:24
Alignment explanation
Indices: 5960--6057 Score: 92
Period size: 24 Copynumber: 4.0 Consensus size: 24
5950 AGGCCAGCAG
* *
5960 ACACGAAGCTACACGAGAAGACAC
1 ACACGAAGGTACACAAGAAGACAC
* *
5984 ACACGAAGGTATACAACAAGACAC
1 ACACGAAGGTACACAAGAAGACAC
* *
6008 ACATGAA-G-ACACGAAGACACAACAC
1 ACACGAAGGTACAC-AAGA-A-GACAC
*
6033 ACACAAAGGTACACAAGAAGACAC
1 ACACGAAGGTACACAAGAAGACAC
6057 A
1 A
6058 GTGGTGCTCC
Statistics
Matches: 58, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
22 3 0.05
23 4 0.07
24 32 0.55
25 10 0.17
26 5 0.09
27 4 0.07
ACGTcount: A:0.51, C:0.27, G:0.17, T:0.05
Consensus pattern (24 bp):
ACACGAAGGTACACAAGAAGACAC
Done.