Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010537.1 Corchorus capsularis cultivar CVL-1 contig10558, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81176

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3910--3942
12
2.7
13
86
13
52
63
6
6
24
1.40
4085--4128
12
3.8
12
81
3
54
6
20
11
61
1.52
4180--4283
22
4.9
22
69
28
82
62
9
22
5
1.47
4153--4283
64
2.0
64
100
0
262
61
10
21
6
1.50
6554--6637
41
2.0
42
97
2
161
41
4
7
46
1.52
6558--6645
42
2.1
41
91
2
140
43
4
7
44
1.54
13881--13947
25
2.8
24
84
8
93
35
26
0
37
1.57
13889--13947
25
2.4
25
91
5
95
35
25
0
38
1.56
26380--26440
21
2.8
21
82
7
68
18
11
19
50
1.76
26992--27061
36
1.9
36
97
0
131
17
20
17
45
1.85
34109--34147
20
1.9
20
85
15
53
17
10
10
61
1.55
43461--43493
1
33.0
1
100
0
66
0
0
0
100
0.00
46505--46536
11
3.1
11
91
8
50
0
12
0
87
0.54
51395--51496
30
3.4
30
79
12
138
18
12
29
39
1.88
51416--51523
29
3.7
29
82
11
148
20
12
30
37
1.89
51395--51523
59
2.2
59
98
0
249
19
12
29
38
1.88
52275--52354
42
2.0
40
87
5
115
21
1
36
41
1.61
66819--66849
2
15.5
2
93
0
53
51
0
0
48
1.00
66836--66934
49
2.0
49
100
0
198
41
8
14
36
1.75
71793--71851
29
2.0
29
100
0
118
30
0
18
50
1.47
72283--72349
33
2.0
33
91
0
107
37
20
26
14
1.92

Tables:   1

The End!