Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010541.1 Corchorus capsularis cultivar CVL-1 contig10562, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 20580
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30


Found at i:13059 original size:2 final size:2

Alignment explanation


    Indices: 13052--13076  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

      13042 ATAAGAAAAT

                                                 
      13052 TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA T

      13077 TTTAACTAAC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:16756 original size:2 final size:2

Alignment explanation


    Indices: 16749--16781  Score: 59
    Period size: 2  Copynumber: 17.0  Consensus size: 2

      16739 ATTCATGTTG

                                                              
      16749 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

      16782 AAGTTTTCTT


Statistics
Matches: 30,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   29  0.97

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
TA

Done.