genome.fa.s10545.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010545.1 Corchorus capsularis cultivar CVL-1 contig10566, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39645

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100--156	29	2.0	29	89	3	89	38	19	8	33	1.82
8066--8131	29	2.3	28	79	7	78	19	7	16	56	1.64
8890--12563	322	11.3	323	86	3	4483	35	15	15	33	1.89
8995--12563	643	5.5	644	86	3	4456	36	15	15	32	1.90
12224--12260	18	2.1	18	94	0	65	37	16	13	32	1.87
13152--13282	4	34.2	4	67	24	52	64	3	1	30	1.21
13150--13266	30	3.8	32	73	18	97	63	3	1	31	1.21
13146--13275	17	7.3	18	70	23	73	63	3	1	31	1.19
13330--13659	25	12.9	25	77	6	225	36	25	12	25	1.90
13328--15469	26	82.2	26	81	7	1875	33	24	14	27	1.94
13807--14004	80	2.5	77	81	8	229	33	23	14	29	1.94
15717--15742	4	6.5	4	100	0	52	76	23	0	0	0.78
15909--15941	15	2.2	15	94	0	57	69	0	6	24	1.10
24933--25016	42	2.0	42	88	2	125	44	10	20	25	1.83
25047--25096	24	2.1	24	92	0	82	28	16	22	34	1.95
32681--32750	27	2.7	25	88	4	104	34	15	17	32	1.91
33881--33911	2	15.5	2	100	0	62	0	51	0	48	1.00
37059--37105	20	2.5	18	87	12	76	36	0	8	55	1.31
37062--37102	20	2.0	20	100	0	82	34	0	9	56	1.32
37058--37105	9	5.0	10	78	16	57	37	0	8	54	1.31
37162--37192	2	15.5	2	100	0	62	48	0	0	51	1.00
37622--37679	27	2.1	27	90	0	89	46	5	12	36	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37630--37678	14	3.6	14	75	5	55	48	6	14	30	1.67

Tables:   1

The End!