Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010546.1 Corchorus capsularis cultivar CVL-1 contig10567, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13656
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:8254 original size:1 final size:1

Alignment explanation


    Indices: 8248--8292  Score: 72
    Period size: 1  Copynumber: 45.0  Consensus size: 1

       8238 ACTCAAATGT

                        **                               
       8248 AAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

       8293 CTAATCCCCA


Statistics
Matches: 42,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   1   42  1.00

ACGTcount: A:0.96, C:0.04, G:0.00, T:0.00


Consensus pattern (1 bp):   
A

Done.