Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010549.1 Corchorus capsularis cultivar CVL-1 contig10570, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8911
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:5115 original size:6 final size:6

Alignment explanation


    Indices: 5068--5116  Score: 57
    Period size: 6  Copynumber: 8.2  Consensus size: 6

       5058 CAAGAAGAAG

                                                    *                
       5068 AGAAAA A-AAAA AGAAAA AG-AAA AGAAAA GAGAAGA AGAAAAA AGAAAA
          1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA -AGAAAA AG-AAAA AGAAAA

             
       5116 A
          1 A

       5117 CCAACCCCAA


Statistics
Matches: 37,  Mismatches: 2, Indels: 8
        0.79            0.04        0.17

Matches are distributed among these distances:
   5   10  0.27
   6   17  0.46
   7   10  0.27

ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00


Consensus pattern (6 bp):   
AGAAAA

Found at i:7883 original size:1 final size:1

Alignment explanation


    Indices: 7847--7875  Score: 58
    Period size: 1  Copynumber: 29.0  Consensus size: 1

       7837 TTGTTGCCTG

                                         
       7847 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT

       7876 CCTTTTTTCT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   28  1.00

ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00


Consensus pattern (1 bp):   
T

Done.