Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010553.1 Corchorus capsularis cultivar CVL-1 contig10574, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 32758
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32


Found at i:16129 original size:3 final size:3

Alignment explanation


    Indices: 16123--16160  Score: 67
    Period size: 3  Copynumber: 12.3  Consensus size: 3

      16113 AAAAAAAGGG

                                                              
      16123 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TATA TAA T
          1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA T

      16161 CAAAAATCAA


Statistics
Matches: 34,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   3   31  0.91
   4    3  0.09

ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37


Consensus pattern (3 bp):   
TAA

Done.