Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010556.1 Corchorus capsularis cultivar CVL-1 contig10577, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48525

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3547--3588
13
3.3
14
81
18
56
76
4
0
19
0.96
3704--3732
14
2.1
14
100
0
58
13
13
20
51
1.75
6466--6490
6
4.2
6
100
0
50
32
0
52
16
1.44
7480--7769
109
2.7
109
91
5
446
37
11
1
49
1.48
8128--8173
16
2.8
17
80
12
51
4
6
34
54
1.46
13748--13773
13
2.0
13
100
0
52
23
15
30
30
1.95
17774--17798
7
3.6
7
100
0
50
48
24
28
0
1.52
24543--24574
1
32.0
1
100
0
64
100
0
0
0
0.00
25801--25829
6
4.8
6
100
0
58
0
51
13
34
1.42
26278--26320
23
1.9
23
95
4
79
23
23
13
39
1.90
29869--30300
213
2.0
213
94
0
756
23
23
26
26
2.00
34191--34215
2
12.5
2
100
0
50
52
0
0
48
1.00
34211--34245
10
3.5
10
84
0
52
51
31
0
17
1.45
34996--35027
2
16.0
2
100
0
64
50
0
50
0
1.00
36443--36514
2
36.0
2
100
0
144
50
0
50
0
1.00
38742--38806
31
2.1
31
88
2
96
27
20
6
46
1.74
38748--38813
31
2.1
31
86
5
89
31
16
6
45
1.72
38939--39025
38
2.3
37
82
3
120
14
20
11
52
1.72
39083--39205
22
5.6
22
75
7
88
44
12
12
30
1.78
39327--39601
22
12.6
22
67
15
92
41
9
15
34
1.79
39484--39601
22
5.3
23
80
4
107
37
10
16
36
1.82
39544--39612
22
3.1
22
87
0
93
34
11
15
37
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39747--39849
22
4.7
22
70
15
61
43
7
13
34
1.73
39820--39948
62
2.1
62
92
2
215
42
10
13
34
1.77
40037--40067
2
15.5
2
100
0
62
48
0
0
51
1.00
41243--41275
1
33.0
1
100
0
66
100
0
0
0
0.00
45505--45585
32
2.6
31
78
9
92
32
33
12
22
1.91
46325--46394
5
14.2
5
82
14
83
82
14
1
1
0.80
46325--46394
28
2.6
27
90
4
106
82
14
1
1
0.80
48175--48199
2
12.5
2
100
0
50
52
0
48
0
1.00

Tables:   1

The End!