Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010557.1 Corchorus capsularis cultivar CVL-1 contig10578, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42139

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4966--4991
2
13.0
2
100
0
52
50
0
0
50
1.00
5469--5516
21
2.3
21
85
7
62
54
12
4
29
1.56
6079--6105
2
13.5
2
100
0
54
48
0
0
51
1.00
6901--6942
20
2.1
20
100
0
84
28
0
45
26
1.54
7458--7497
20
2.0
20
85
0
53
55
2
0
42
1.13
8009--8057
24
2.0
24
92
0
80
59
4
12
24
1.50
8334--8490
74
2.1
75
89
3
246
22
29
8
39
1.83
8497--8535
20
1.9
21
94
5
71
30
0
10
58
1.31
9531--9578
3
16.0
3
100
0
96
33
0
0
66
0.92
11128--11158
16
1.9
16
93
0
53
32
0
29
38
1.57
11295--11333
2
19.5
2
89
0
60
56
0
0
43
0.99
11657--11681
10
2.5
10
100
0
50
0
20
60
20
1.37
13854--13889
16
2.2
17
90
5
56
0
2
8
88
0.59
18636--18664
2
15.0
2
92
7
51
48
0
0
51
1.00
19790--19832
22
1.9
23
85
4
61
58
9
13
18
1.62
26333--26383
27
1.9
27
92
4
86
9
31
7
50
1.64
37512--37684
35
4.9
35
96
1
319
49
11
9
29
1.71
37530--37593
20
3.5
20
66
27
59
51
9
9
29
1.65
37512--37689
71
2.5
71
97
0
331
48
11
10
29
1.71
37684--37764
36
2.2
36
82
8
94
49
9
13
27
1.73
37803--37876
11
6.7
11
90
6
123
58
9
24
8
1.57
37881--38213
35
9.5
35
85
7
408
43
10
20
25
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37881--38228
106
3.2
104
85
6
455
44
10
20
25
1.82
37869--38213
141
2.5
141
86
6
486
44
10
20
24
1.82
39165--39245
31
2.6
31
94
0
144
35
16
16
32
1.90
41347--41377
15
2.1
15
100
0
62
54
0
0
45
0.99

Tables:   1

The End!